RNA id: XM_039816730.1


Basic Information

Item Value
RNA id XM_039816730.1
length 2826
RNA type mRNA
GC content 0.50
exon number 2
gene id scg2b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25959806 ~ 25963171 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgatgACGCGGTGGTCAGGTGTTGCCTCATATAACGAGGGGAGCTGTCCAAGTGCTGAAAACAGAAGAGAACAGCACCGTTACTGAGGAGATGCCATACACCTTCGCTGCTGTCTGAGCTTTATTGCCAAAGGTAATAAATTGCCTATAATGCTGCATTTCCACCACAAGTTGCCCGCGGGGGGAGCCGTTGTACTGCTCGCCTTCCTCCTCCATGGATGCGCCGTGCAGGCTGCGTCTCTCCCCCGCCACTACAGGCTCCGAGGCGGTGAGGGTGAGGGGCAGCCGGCTGCCTACCCACCCAGCTCCGACATGATCAAAGCCCTGGAGTACATTGAGAACCTGAAACAGCGGAACGGGGGCCGACCTGAACCCACGGATTACGACGAAGTGGAGAAGTTCAGGGTCCTGCTTCAGCTCGCCTCGCAGCAGGACGAGAGTCCCGGAGACCGTCAGCCTGCCCCCGGCGTGCAGAGGCAGGACATTACCGCTGAGCAGCTGATGAAAACCCTGCTCAAGTCTATTCAGGATCGAGCCGGGAAAGACGTGAAGCTCAGCCCCGTGTCGGCGCCCAGAAACGACCGCCGCACGCACCGGCACCGCACCAAAGACACTGAAGTCCCCGTGAGCGCACCGGCAGACTACGGTAATTTCCCCAGACCCCACAAGAAATACCCGCTGATGTTTGAGGACGAGGAGAATACAGACGCTTCCAAGCGGGCCACAGAGGACCTGGATGAGCAGTACACGCCCCAGAGCCTCGCCAATTTACGCTCCATCTTTGAGGAGCTTGGGAGGATGCCCACATTCGGCGGCCAGAAGAGAGACGTGTTCGGGGACGACGACGACGATGAGGAAGGCTTCAGCCTGAGAAGTCAGACTTACGACGATGTGGCCGGAGGAGAGGAGTGGGTTCCCGTGGAGGACAGGGAGGAGACGGAGGAGATGGTCAACGGGAGCCACGAAGAGATGGACAGAGCGCTCGGTGAGCAGGAGGAAGCGGAGAGGGAGGAGATGCAACGCCGGAACCAAGAGGAGACCGGTGATGACACTAAGATGGTAGATTACTACCTGTTGAAGGTCCTGGAGATGAGCGACCAGACGCAGAAGAGGGACAAGACGGGAGAGCAGAGGAAGAGGCTGATCCGCCCTTCCATCCTCGATCCTCGGACAGTgaaggagctgctgcagctctcCCTGAGGCTCCACGTCCCTCCACAGGACCTCATCGACATGCTGCTCACAGAGGAGCTCAGGAAGCTCCACCGCGAACCCCAAGCCTCGGCTGGCCGCTACCCGAGCGGCCAGACCCCAAAGATCAGGTACTACAGCCGCAGACTGCCGCTGAAGAGCAAGCCCGTACCCGAGGACATGGACAGAGAGGACTTTTTAGACATCATCGGCGTGGAGACGATCAGTAACGAGTATCCTGTAGTGCAGAGACCCGTGAAAACCTCTCCCCCCTTAGACAGAATCCCAGTGGCGTCCAAACCTGTTGCAAATCCAGTTCAAAGTCCGGTTAAAATCTCTCCCCCCTCCGGGCGCAGGGAGAACCTCTTTTTATCCGAGCTCAACAAAATGCCTCTGAAACGTCAGGCTGACGgcgctgatgatgatgaagaagatGATGGCGATGTGGAAGACGAGGTGACGACTTACCTAGCGGCCAAAATCCTCACAGAGTACCCCAACACCATCACCAAGCGGGACACCCAGTCGCAGCTGAAGGGACAGTTCCCCTACGAGCTGTACGAGCGGGTTATGAAGGACTACTTGGGGCAAGCGGACACTGAAAAGAGGCCAGTGGCCAAGAGGGAAACCGAGGTGGCCACAGAGGAGAACGTTGAGCCCACGGAGATGCAGGGGAAAGAGGAGATCACGGCCAAGACCTCGGCTCCACAGACCgtagatgaagaggaggagcacCCTGAAAAAGCAGTGGCTGGGATGTAGCCTGATGCCCTGCAAGACGCATGGAATTATGAATATAGTATTTAATACTGTCTCAAAAATAAAGTTTGGTGGACGTGATCTAGTTtacaaaatgtatattatatgaACTGGTATTAATATCACCCTAACGAAAATGAACTATTGCAATCTTATTGGtccaaaaacattttgaaaatatagCCTACTAGTCCCTACTTGCTGCAAGAACATTATAGAAATATATTGATATCATAGGAGATTAAAAGGTGCAATCCGTGTataaatgagaagaaaaaaaacaatatatccTCAAAACACTTTTGATTTGAACGTGTTGTCAAATTGCCAATTAATACATGGACTTATATCAAAACACAATGAAATCCAAGTTATGACAGTTGTGTGATGTTGTTAAAGGTTTGTTTACATTAATGGTGTTTGTGAACAGGCCTATATTTTCAATTATAATCAACCGAGTAACAGTAAAAACACGTATTTTCCATCAATGTCAAACTATTCAATTGTATGTGAATATATCTGTATACTTTACAGATGCCTTCAAAATCGCAAGCATAGAGTTAAGTGAAAGGAGTACTAAAGGAATATTATAGGGATTTTTTCGTTAGGGCAGTGTGCTGGGCTGAGAACGAGTGTTGTTGTGACTCGTGATATATTCAGGGTTAGTAGATTTAATGTCATTATTATGGATAATTATTTCCAAGTCTGAATATCAAACCGTTGCCTGCCTTCCAACCCTTTCATACTGCGAAGCTCTGTATTGTTGGCCTACCAGTGGTTGTGCTATGTATGctcatttttaaaccattttgTACATGTTCAATAATGTGTGATGAATCACAGATGAATAAAGCATCAGCGgtattatttttctt

Function

GO:

id name namespace
GO:0030141 secretory granule cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158843 lncRNA upstream 43084 25916500 ~ 25916722 (+) True G117847
TU158842 lncRNA upstream 53490 25906115 ~ 25906316 (+) True G117846
TU158841 lncRNA upstream 54675 25904913 ~ 25905131 (+) True G117845
TU158831 lncRNA upstream 70965 25880504 ~ 25888841 (+) True LOC120568898
TU158861 lncRNA downstream 86964 26050135 ~ 26050878 (+) False LOC120567655
TU158959 lncRNA downstream 95083 26058254 ~ 26065839 (+) True G117917
TU158981 lncRNA downstream 241440 26204611 ~ 26204830 (+) True G117933
TU158986 lncRNA downstream 245185 26208356 ~ 26208871 (+) True G117938
TU158990 lncRNA downstream 343518 26306689 ~ 26307634 (+) False ece2a
XM_039816728.1 mRNA upstream 15356 25931541 ~ 25944450 (+) True acsl3b
XM_039816643.1 mRNA upstream 148526 25808021 ~ 25811280 (+) True LOC120568896
XM_039816642.1 mRNA upstream 182129 25773777 ~ 25777677 (+) True LOC120568895
XM_039816641.1 mRNA upstream 186338 25743327 ~ 25773468 (+) True LOC120568894
XM_039815788.1 mRNA upstream 402174 25376185 ~ 25557632 (+) False LOC120568352
XM_039816731.1 mRNA downstream 5439 25968610 ~ 25972306 (+) True LOC120568964
XM_039816732.1 mRNA downstream 5439 25968610 ~ 25972306 (+) False LOC120568964
XM_039816734.1 mRNA downstream 5734 25968905 ~ 25972306 (+) False LOC120568964
XM_039814591.1 mRNA downstream 37051 26000222 ~ 26046169 (+) False LOC120567653
XM_039814589.1 mRNA downstream 37560 26000731 ~ 26046169 (+) False LOC120567653
TU158825 other upstream 129111 25830055 ~ 25830695 (+) True G117829
TU158814 other upstream 165852 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 203916 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 1005559 24950568 ~ 24954247 (+) True G117664
TU158471 other upstream 1284053 24673924 ~ 24675753 (+) False LOC120569045
TU158989 other downstream 252556 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 432255 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 436249 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 453337 26416508 ~ 26418008 (+) True ccl20a.3
TU159178 other downstream 627659 26590830 ~ 26600072 (+) True prkab2

Expression Profile