RNA id: XM_039816737.1


Basic Information

Item Value
RNA id XM_039816737.1
length 2928
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC120568966
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25972731 ~ 25988947 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGTTGCGCAGTGGAGTACAGCCGTCCGCCATCACTGCAtacaagctaacattagccaaaaTCCACTGAGAAGAGAGCGAGTGACAACAACATAACAGACCGACCTAATTCCTGAAGGGGAGGTCGCTGAGTTTCTCTGCTGCTTTCCTTGCGTAGAAAACAAACTAGCAACTGCCTTTCATGTAGTCTTAAAGTCAACTTAGAAACGAAAGTCGTTCTAACTAATCATGTCCAACCTCAAAGGCGGCACCAAGAAGGACACCAAGATGAGGATACGAGCCTTTCCTATGACAATGGATGAGAAGTATGTGAACAACATCTGGGACCTTCTAAAGAATGCTATCCAGGAGATCCAGAGGAAGAATAACAGTGGGTTAAGCTTTGAGGAGCTGTACAGGAATGCCTACACCATGGTGCTCCACAAGCATGGGGAAAAGCTCTACACAGGCCTGAGGGAGGTCGTCACAGAGCACCTCATCAACAAAGTACGGGAAGATGTCTTAAACTCTCTAAATAATAACTTTCTGCAAACACTGAATCAGGCCTGGAATGACCATCAGACTGCCATGGTTATGATCAGAGACATCCTCATGTACATGGACCGGGTCTATGTTCAACAAAACAATGTGGAGAATGTGTACAACCTCGGCCTCATCATATTCAGGGACCAGGTGGTGCGCTACGGCTGCATTCGAGACCATCTACGACAGACGTTACTGGACATGATTGCTcgtgagaggaagggagaggttGTAGACAGGGGCGCCATCAGAAACGCCTGCCAGATGCTGATGATTCTTGGCCTGGATGGCAGGTCTGTATATGAGGAAGACTTTGAGGGTCCTTTCTTAGATATGTCAGCGGAATTCTTCCAGATGGAGAGCCAAAAGTTCCTAGCAGAAAACAGTGCCAGTGTCTACATTAAGAAGGTAGAGGCCAGAATCAATGAAGAGATAGAGCGAGTTATGCATTGCCTCGACAAGACTACAGAGGAGCCCATTGTCAAGGTGGTGGAAAGGGAGCTAATTTCTAAACACATGAAGACCATTGTGGAGATGGAGAACTCTGGCCTGGTTCATATGCTCAAGAACGGCAAGACAGAAGACCTGGCATGCATGTACAAGCTGTTTAGTCGTGTGCCAAATGGCCTGAAAACGATGTGCGAGTGTATGAGCTCTTACTTGAGGGAGCAAGGAAAAGCTCTGGTGTCAGAAGAGGGAGAGGGCAAGAACCCTGTCGACTATATCCAGGGACTGCTAGACCTCAAGACACGATTTGATCGTTTCCTCCTCGAGTCTTTCAACAATGATAGACTCTTCAAACAGACCATAGCAGGAGACTTTGAGTATTTCCTCAACCTCAACTCCCGCTCCCCAGAGTACCTATCACTCTTTATTGATGACAAGCTCAAGAAGGGTGTCAAAGGGGTTACAGAACATGAGGTGGAGGTAGTCATGGTTTTTTTGTTTATGCAGGAGAAGGATGTGTTTGAAAGGTACTACAAGCAGCATCTGGGCCGCAGGCTGCTCAGCAACAAGAGTGTTTCAGACGACTCAGAGAAGAACATGATCTCCAAGCtcaagACAGAATGTGGCTGTCAGTTCACCTCGAAACTGGAAGGGATGTTTAGAGACATGAGCATCTCCAACACTACCATGGATGAGTTCAGGCAACACATACAAACCACGTCGGCATCTCTAAGTGGTGTGGACCTCACAGTAAGAGTCCTCACTACTGGTTACTGGCCTACACAGTCGGCAACCCCCAAATGCACCATCCCCCCTTCTCCCAGACACGCCTTTGAAGTCTTTAGAAGGTTTTACCTCGCTAAGCACAGTGGTAGACAGCTCACACTGCAACACCATATGGGCGGGGCAGACCTAAACGCAACTTTCTATGGAGCTATTAAAAAGGAGGACGGTTCAGAGGTGGGTGTGGGAGGGGCTCAGGTGACAGGCTCCAACACCCGGAAGCACATACTGCAGGTCTCCACCTTCCAGATGACCATCCTCATGCTCTTCAATAACAGAGAAAAGTGCACTTTCGAGGAGATCCAACAGGAAACGGATATTCCTGAGCGGGAGTTAGTGCGAGCGTTGCAGTCTTTGGCCTGCGGGAAGCCGACGCAGAGAGTTCTCACCAAGGAGCCAAAATCTAAGGAGATTGAGAGCGGCCACGTGTTTACAGTTAATGATCAGTTTACTTCCAAACTGCACAGAGTCAAAATACAGACAGTTGCTGCTAAACAAGGTGAATCAGACCCTGAAAGGAAGGAGACGCGGCAGAAAGTGGATGATGACAGGAAGCATGAGATTGAGGCAGCCATTGTCCGAATCATGAAGTCGAGGAAGAAGATGCAGCACAATGTCCTGGTGGCGGAGGTAACTCAGCAGCTCCGAGCACGTTTTCTTCCGAGCCCTGTTGTAATTAAAAAGCGTATAGAAGGACTAATAGAAAGAGAATACTTGGCAAGGACGCCAGAAGATCGCAAAGTGTACACCTACGTTGCATAGAAGATGAACTGTGgatgagaggaggaagagactggattgggggggcgggggcgggatttgttgttttctttggaCTGTTGTTACGCATGGACTGGAAGTTTCTTTTAAAGACAAATGCTGGGAACCTGATTCATCCTCCCTTACAAAAACACAGTAAAACGCATAAATGTGGGAAGAAAATGTCAGCgcaggaaaaaaaatccatcaaaACTTGTAGATGATTTTTAAATCAGGCCCAGTCTTCCTATTCCCTGTGAGTTTTAATATGGATGGATCCAGCTTCAAGCTTTTCACTGTTTTACCCTTGTAGAGATCAAACTTGCAAAGAATCCCTTGGGAAAATGTGAATGCACCACATTATTTTTGTTTcaatactgtataaaaaaaaataataaaattattaaaaacagcAAA

Function

GO: NA

KEGG:

id description
K03869 CUL3; cullin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158926 lncRNA downstream 34221 25937605 ~ 25938510 (-) True G117890
TU158909 lncRNA downstream 100478 25871325 ~ 25872253 (-) True G117875
XR_005640802.1 lncRNA downstream 142867 25828793 ~ 25829864 (-) True LOC120568899
TU158799 lncRNA downstream 377974 25594273 ~ 25594757 (-) True G117813
TU158798 lncRNA downstream 379146 25593043 ~ 25593585 (-) True G117812
TU158940 lncRNA upstream 465 25989412 ~ 25992001 (-) False LOC120568967
XR_005640814.1 lncRNA upstream 510 25989457 ~ 25992209 (-) True LOC120568967
TU158939 lncRNA upstream 59983 26048930 ~ 26051078 (-) True G117899
XR_005640606.1 lncRNA upstream 75642 26064589 ~ 26086344 (-) True LOC120567720
XR_005640605.1 lncRNA upstream 75642 26064589 ~ 26065894 (-) False LOC120567720
XM_039816736.1 mRNA downstream 4311 25963373 ~ 25968420 (-) False LOC120568965
XM_039816735.1 mRNA downstream 4311 25963373 ~ 25968420 (-) True LOC120568965
XM_039816729.1 mRNA downstream 54958 25895638 ~ 25917773 (-) True pax3a
XM_039815590.1 mRNA downstream 836772 25114378 ~ 25135959 (-) False LOC120568225
XM_039814882.1 mRNA upstream 63152 26052099 ~ 26058572 (-) False LOC120567824
XM_039814881.1 mRNA upstream 68361 26057308 ~ 26058572 (-) True LOC120567824
XM_039815723.1 mRNA upstream 206896 26195843 ~ 26203560 (-) True map6d1
XM_039816630.1 mRNA upstream 326823 26315770 ~ 26319595 (-) True camk2n1a
XM_039816117.1 mRNA upstream 336541 26325488 ~ 26330262 (-) True mul1a
TU158687 other downstream 1049413 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 1436235 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 1951230 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 1952293 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2103505 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 672674 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 830891 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1682029 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1724520 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1728604 27717551 ~ 27718759 (-) True G118524

Expression Profile