RNA id: XM_039816738.1


Basic Information

Item Value
RNA id XM_039816738.1
length 3942
RNA type mRNA
GC content 0.53
exon number 24
gene id sgip1b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14752942 ~ 14774303 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctatctctctgtaccgctctgctttttttctctctcctttgccTTTCCTCAGCATCCCCCCTCTCAGAGATGGCGTGTGTCGGTGCTGCTCGGGCTGCCGGGGCCTAACgtgcacacagagagaagacCCCCCCGCCCCTCCCCTCCCATCCTCCGATTTGCTGCATATTCCTCGGGTGTCTCTTCTCACTGTGTCCTCCACCACTGCTTCTGCCTCTCAGctctccccccaccccaccactCCCCGTGCGGGTGTCTGGGAGTTGGGCCCTTGGGGGTGGAGGGAATCAACATCGTGCTTCGCTGGGGAGCTGTGCAGAATTAGCTATGCCCTGCCCAGGAATCCTATGACCGGCTGgatttctacatttctgtcCGCGTGTGCGCCGGCGGACAACATAGGATGAAAATCTGCAGTCATGATGCAAGGACTGAAAAAACGAACCAGGAAAGCCCTGGGCTTACGAAAGAGAGACAAGGATACAGATGCAACGACTTCACCTAACAAAGAAGGAGCTGGAAGCAGAAAGAAAGGAAATAAAAAGGCCAATGGAGCCCCAAATGGTTTCTATGGGGAGATTGACTGGGACAGATATGCCTCTCCTGACGTGGATGAGGAGGGCTTCAGCCTCCGGCCCGGTGACGAGGGCGATGCAGCTTCCCAAGCAAAGCAGTTTTTCTCCTCCAGCGACTCCGAGGACGACGAGGACAGCAAGAAGAAGTTCAAAATTAGGATCAAGCCGCTGGTGGCGGACAGTGCCAAGTGTGTCCCTCCATCTATGGATGAGCTAAAAGCCTCCGTGGGAGGCCTGgcactctctccatctctgAAGAGAAGTCCGAGACGCAGCCCGGGACAGATAAAAAGGAATTTGTCCTGTGAAGAGATTGCCAGACCCAGACGCTCCACCCCCACACCAAGTCCTGCCCCTGAGATGCCAAGTGACAGGCTGTCGCAGAATGTTCCTGCCTTTTTTGGGCTGCCTTCAGAGACCAAATATGCCAGATATGATGTGGTCCCTACTGAAGTATGGGGAGAATCAAGACCGTGCTCAGAATCACAGCTGAGCAGAAGTTTCCCGACAGGAGCCCCTCCTCCGCTTCCTCCAAAAAACATTCCATCAAGAAGTCATTACGGCTATTCTTCGGACTCTGCTGCTGATCTACCCAATGGAAGGGCAGCTCGCAGGTCTGCCCCCATCTACCTGAACGTCCTGTCCCCCGCCTCTTACCGAGGCTCCCCGGCCCCTGACCTAGACGACGTGTTCGGCCCCACGGACGGCACCCACACCAGTGAGGAAACGATGTCTCCCAGATGGGTTACTTTCACCAGCGACAGACCCCCGCCGCCCGATGAGCCTGCACCACCTCCCCCACCGGACTCTCCTCCTCCAGACACGCCCTCGTCCACCCCCTCcaccccctgtctctctccaggTCCGCCGCCAAACGAGCCCCCGCCTTCGCCTCCGTCGCTTTCTCCCGGGTCTCCGCCTCCTCCTTTCACGCCACCAGAATCACCATCCTCCATCGTGCTCGGACCTCCTCCTCCGGATGAGCCAGCCCCTCCCCTGCCTCCCGACTTCTCCCCCTCTAATTCGCCTCCAATATGCTTCGACCACGAGGCGATCGATGAGGAGGTGCTGCAGTTTGCAGAGTACTCTTCGTCTCCTGTCCCCATCAGCCCTGTGCCCCCTCTGCCAGCGGAGTGGAGGTCTCCTCGGCCAGGAGTCACATCTCCCCTGGTCCTGGGGGGCATGGGGGGAAAGAGGACTCCAGAGGGAGCATACCTGAGAGATGATATCCCAGACTTTGTGGGTTCACCCAGAGAGCTGACGCCGAGCTTCAGGGGCACGCCACCTCCTCTCCCTCCAACCACCTACAGGTCTATTATGTCTTCCCCAGGGCCCTCCTCCGGCAGCAGCCCCTCGTCCCCAGCCCGTCCCACCACGCCTCAGTCTCGAGGCAGTCCAGTCcccccgcctcctcctcctcgaccGTCCTCGCGACCAAAGCTGCCCCCAGGGAAACCAATCACAGACCTGACTCGGCCCTTCAGTCCTCCGGTTTCAGGCAGCCCCCCACCTTTCGCCCCCCTGGCCCGGGCAGAGAGctcttcctccatctcctccatTATCTTACAGAGTGCAGCGTCCACTCCAACCTTAGGAAGGGACCTTAACATGTCCGCCACAGAGGCCTCACAGCCTCTGGTATGGTTTGACCACGGCAGGTTTTATTTAGCTTTTGAAGGATGCTCCAGAGGACCCAGTCCGCTCACCATGGGACCCCAGGACACTCTGCCAGTGGCAGCTGCCTTCACAGAAACCATCAATGCCTACTTCAAAGGCGCAGACCCCAGCAAATGTGTTGTGAAGATCACAGGGGAGATGGTGCTGTCCTTCCCTGCCGGCATAACCAGGCATTTTGCCAGCCACCCAACTCAACCCATCCTCACCTTTTGCATCAGCAACTACAGCCGACTGGAGCAGGTCCTCCCCAATCCACAGCTGTTGTGCTGTGATTCCACAACAGACAGTGTAGACACCAAGGAGTTCTGGGTGAATATGCCAAACTTGATGAGTCATCTGAAAAAAGTGGCTGAACAGAAGCCTCAGGCAACATACTACAACGTGGACATGATCAAATATCAGGTGTCAGCAGAGGGGATCCAGTCCACTCCTCTGAACCTGGCGGTGAGCTGGCGAGGTGACACCACCAACACAGACCTTAGAATAGACTACAAATACAACACAGAGGCCATGGCCGCCCCCGTGCCACTACACAACATCCAGTTCCTGGTTCCTGTGGATGGAGGCATGGCCAAACTCCAGGCCATGATCCCCCCTGCCACCTGGAATCCAGAGCAGCAGACGATACAGTGGAAAATCCCCAGTCTCTCTCATAGATCTGAAAATGGAGGAGTAGGGGCTCTTCTGGGCCGGTTCCAGATGACAGAAGGTCCCTGTAAACCCTCACAGCTGGCAGTCCAGTTCAGCAGTGAGGGATGCACTCTGTCGGGGTGCGACATCCAGCTGGTTGGGACTGGCTACCGGTTATCGCTGATCAAGAAGAGATTTGCTGCAGGGAAATATTTGGCGGATAATTAGTGGACCTGTTTGTGAACGGAACCAAAAGAATCAATGGCTTTTGACTGTGAAGACTATGGATCCATCCCATGTTTAGTGCATTTGAAACTTTATCTTTAGCAACCATTAGAATTAATGGTTGAGATTTAACagaataacacaacacacagagatgatTTTTGAGTTCGTAATATAATTTTCAGTAGACTGACTGCTGCTGAGTTTATGCAAGTAAATACAAATCATTAGTTTTGTGAACTTGGAACACATATGGGCCTACATGGAGTAAAACATAGGGAAGCTCTGAttctttgttcttgttttcaTACTTGTGGATTCATAGAGTGATCCAGCCTTATTCATTGCAGTTTCTTTTGTCTAACTGGTCGTCATTGCAAATGCACTGTAAAAGATAATGTGAATTGATTATATAATATTACAACAATCTTAAGCAAGGTGGAAAAGActggaaaatgtaaaaaaaaaagaaaaaaaaaagaagtgtatTATAGAGTTGCTTTGCAGTTGTATTTTAATAAGTTATAGGTTCCATGGTAATATCTGATTTACACTGCCACCTCAAATCAGAGTTTTTTCCACCACGTGTTATTGATCTTTATTGTTGTCTAAGCAGAATTTATGTTTCTGTGTAGACAGCCTTTGAAATGTCACAGCCCATTCTATCAGTCTTGTGATTGAAGGTGACTGGTCAGTTCCCAGTTCAAATGACCTGCAGCGCTGGAATAACATCAGcactcttaaaggtcccatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactgtatctgaattctctttcccgaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154563 lncRNA upstream 59040 14693566 ~ 14693902 (+) True G114585
TU154529 lncRNA upstream 126172 14626167 ~ 14626770 (+) True G114561
TU154518 lncRNA upstream 192265 14558365 ~ 14560677 (+) True G114550
TU154433 lncRNA upstream 411601 14337822 ~ 14341341 (+) True G114488
TU154334 lncRNA upstream 438309 14314303 ~ 14314633 (+) True G114429
TU154653 lncRNA downstream 37359 14811662 ~ 14812209 (+) True G114650
TU154747 lncRNA downstream 216685 14990988 ~ 14993083 (+) False rgs18
TU154767 lncRNA downstream 247974 15022277 ~ 15025102 (+) False ro60
TU154769 lncRNA downstream 290787 15065090 ~ 15065393 (+) True G114745
TU154770 lncRNA downstream 291820 15066123 ~ 15066439 (+) True G114746
XM_039814578.1 mRNA upstream 43121 14708513 ~ 14709821 (+) True LOC120567645
XM_039814567.1 mRNA upstream 60106 14687762 ~ 14692836 (+) False LOC120567643
XM_039816958.1 mRNA downstream 3653 14777956 ~ 14779867 (+) False dynlt5
XM_039816960.1 mRNA downstream 3653 14777956 ~ 14779867 (+) False dynlt5
XM_039816959.1 mRNA downstream 3772 14778075 ~ 14779867 (+) True dynlt5
XM_039816954.1 mRNA downstream 7441 14781744 ~ 14792638 (+) False mier1b
XM_039816957.1 mRNA downstream 7441 14781744 ~ 14792638 (+) False mier1b
TU154338 other upstream 456949 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 457674 14287150 ~ 14295268 (+) False LOC120568245
TU154339 other upstream 457674 14292760 ~ 14295268 (+) False LOC120568245
TU154337 other upstream 461982 14288355 ~ 14290960 (+) False LOC120568245
unassigned_transcript_558 other upstream 1534732 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154847 other downstream 377493 15151796 ~ 15157199 (+) True G114789
TU155017 other downstream 698440 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 746496 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 947836 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 948204 15722507 ~ 15722573 (+) True LOC120569146

Expression Profile