RNA id: XM_039816752.1


Basic Information

Item Value
RNA id XM_039816752.1
length 3203
RNA type mRNA
GC content 0.52
exon number 17
gene id mcm4
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21785299 ~ 21794603 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGAACTCCCCTCTGCAGTGAAGGAGTCGACCGGAAACAAAACGACGATCCTGGCACGCTATTGGTCCAAAGTTCCCCGCGAAAAAACGTCACTCGCAGTTTCGCGCCAGATCTACAGCACTCGGACGTACACACAAGAAGAGATATCCAAGCAACAATGTCTTCCCCAACATCGACTCCTGGTGGCCGCAAGCGAGGCAGAAACACCAACCCATCCACACCCAGCAGTGAGGGCCctacctctcctccctctcagcggCGCAGAGGCCAGGACTCCTCCACCGGGGACCTGATGCCGATGCCCACCTCCCCGGCCACCGACATGCTCAGTCCCGCAGCACCTCAGGATAATTCTCTGTTATCCAGCCCGCGACCCTCAGTCCTACCCAATGAAGTGGACATGAGCTCCCCTCTGATGTATGGGACCCCCAGCTCCAGGGTTGAAGGGACCCCACGCAGTGGAGTGCGTGGCACTCCAGCCAGACAGCGTCCTGATCTGGGGTCAGTCAGGAAGGCTCCACAAGTTGATCTTCAGTCAGAGCCGccaAGTGCTGATGGAGCCGTAACCAGTGAGTCAAACGCAGGCCAGAGGCTGGTGATCTGGGGGACTGATGTCAATGTTGGGACCTGCAAGGAGAAGTTTCAGAGGTTCCTGCAGAGGTTCATTGACTTAACTTCCACTGAAGATGAGAACGCTGGTCTGGACCTGAATGAGCCTTTATACATGCAGAAGCTGGAAGAGATCAGTGTTGTTGGGGATCCAGTGCTGAATGTGAATTGTCTACATGTGCAGTCCTTTGATGCAGAACTTTACAGGCAGCTCATCTGCTACCCACAGGAAGTCATCCCAACCTTTGACATGGCAGTCAATGAGCTTTTCTTTGAGCGTTTTCCGGACTCCATCCTGGAGTTCCAGATCCAAGTCCGCCCCTACAACGCCCTGAAAACCAGAAACATGAGGAACCTGAACCCAGAAGACATCGATCAGCTGATCACCATCAGCGGCATGGTGATCCGCACCTCACAGCTCATCCCCGAGATGCAGGAGGCTTTCTTCCAGTGCCAGGTGTGCGCCTTCAGCACCCGTGTGGAGGTGGATCGCGGGCGCATCGCTGAGCCGGCTGTGTGCCGCAACTGCAACACCACCCACAGTCTGGCGCTTGTTCACAATCGCTCAGTCTTTTCAGACAAACAGATGGTCAAAATTCAAGAGTCTCCTGAAGACATGCCGGCTGGTCAGACGCCTCACACAACTATTGTCTATGCTCACAATGACCTGGTTGATAAAGTGCAGCCAGGAGACCGCATAAACATCACCGGTGTCTACAGAGCAGTCCCAATGCGCGCAAACCCACGTCAGAGCAACGTAAAGTCGGTGTACAAGACACACATCGATGCCATCCACTTCCATAAGACGGACCAGAAGCGCCTGCACGGTTTGGACGAGGACGCCGAACAGAAGCTCTTCACCGAGGACCGGGTGCAGACCCTGAAGGAGCGGTAGCAAGCAACGCAGACGCCGCTCTATGCAGCGCACTCCTCGCCTCGCACAAGTATCTATGAGCATGGGGACatcaaaattGGCATTTTGCTGCAGCTGTTTGGCGGGGCTCGTAAGGACTTCAGTCAGACCGGCCGGGGCAACTTCCGTGCAGATGTGAACATCCTGCTCTGCGGAGACCCCGGCACCAGTAAGTCCCAGCTGCTGCAGTACGTCTACAACCTGGTGCCCCGTGGCCAGTACACGTCGGGGAAGGGCTCCAGCGCTGTGGGTCTCACCGCCTACGTGATGAGGGACCCGGAGACCAGGCAGCTGGTCCTGCAGACCGGGGCTCTGGTGCTGAGCGACAACGGCATCTGTTGCATCGATGAGTTTGACAAGATGAGTGACAGCACACGCTCTGTGCTGCACGAAGTCATGGAGCAGCAGACCCTCTCCATTGCCAAGgcTGGAATTATTTGTCAGCTCAACGCCCGTACCTCTGTGTTGGCTGCTGCTAACCCTATTGAATCTCAGTGGAACCCCAAAAAAACCACGATTGAGAACATTCAGCTGCCTCACACACTGCTGTCCAGATTCGACCTCATCTTCCTGATGCTGGATCCCCAAGACGAGGCTTACGACCGCAGGCTGGCCCACCACCTGGTGTCGCTGTACTACCAGAGTGAGGAGCAGATTGAGGAAGAGTTCCTCGACATGGCTGTGTTGAGGGACTACATCGCATATGCACGAACATACATCAATCCAAGGCTGAGTGAGGAAgccagccaggctctcattgagGCCTATGTAGACATGAGGAAGATAGGCAGTGGTCGAGGGATGGTGTCAGCCTACCCCAGACAGCTGGAGTCCCTGATCCGCTTGGCGGAGGCCCACGCCAAGGTGCGCTTCTCTGAGAAGGTGGAGACCATTGACGTGGAGGAGGCCAAGCGGCTCCACAGAGAGGCCCTCAAACAGTCGGCCACTGACCCCAGAACAGGATTTGTTGACATCTCTATTCTCACAACAGGTATGAGTGCCACCGCGCGCAAACGCAAGGAGGAGGTCGCCCAAGCCCTGAAGAAACTGATCCAGGCCAAAGGAAAGACACCTGCCATGAAATACCAGCAGCTGCTTGAGGATCTCAGAGGACAGtctgaaaatGCGATCACTAAGGAGCTGTTCGACGAGGCGCTCCGAGCCCTGGCTGACGAGGATTACTTGACGGTTACTGGAAAGACTGTTCGTCTGCTCGCCTAAGGCACACCCTGCAATTATGTACAGTCCTTAATTTTAAATCCTATCCTGTGTCAACCTATTTCACATGctgtaatattttgtataatttaaccaccacatgtttacatgttttctGGCCTTACTAGATGTTTGACTGTCCTGCaatttagaaaaatatataaCCGCATGACTCGTTCAAACAGTCAtgttgtgatttaaaaaaaaatagaaaacaaaactcACATACTAGCAATTAATAGAGCTAATATTCGAAAGTGCttgtatttcatttgtttgttaCCTGTTTTCAAGTAATGCTCTTGCTGTTTTTGTGTTATGGTAAAAAGCTCTTTTGTTCAAACTTGTACATTGTAATGACAGAGTTAAATCAGTCACTTATTTTCACAGAGATGAATTGTCCTTGTAGCTTGCATTGATTACTTGTTCATAgagggaaaataaaatgttgctcACTACAAA

Function

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K02212 MCM4, CDC54; DNA replication licensing factor MCM4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157375 lncRNA downstream 124832 21658679 ~ 21660467 (-) True G116758
TU157354 lncRNA downstream 189993 21592739 ~ 21595306 (-) True G116743
TU157296 lncRNA downstream 485217 21297415 ~ 21300082 (-) True G116692
TU157207 lncRNA downstream 575526 21208742 ~ 21209773 (-) True G116651
TU157135 lncRNA downstream 677581 21107514 ~ 21107718 (-) True G116582
TU157461 lncRNA upstream 16259 21810862 ~ 21811146 (-) True G116832
TU157550 lncRNA upstream 203191 21997794 ~ 22002858 (-) True G116893
TU157587 lncRNA upstream 383690 22178293 ~ 22178534 (-) True G116922
XR_005640797.1 lncRNA upstream 387361 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA upstream 400721 22195324 ~ 22200980 (-) True G116954
XM_039816673.1 mRNA downstream 1408 21767121 ~ 21783891 (-) True ube2v2
XM_039816674.1 mRNA downstream 1602 21767121 ~ 21783697 (-) False ube2v2
XM_039816670.1 mRNA downstream 81194 21666739 ~ 21704105 (-) True sntg1
XM_039815360.1 mRNA downstream 213679 21496140 ~ 21571620 (-) False agap3
XM_039815358.1 mRNA downstream 213683 21449437 ~ 21571616 (-) False agap3
XM_039816222.1 mRNA upstream 4353 21798956 ~ 21833615 (-) True spidr
XM_039815195.1 mRNA upstream 39911 21834514 ~ 21847366 (-) True mapre2
XM_039815793.1 mRNA upstream 54300 21848903 ~ 21869956 (-) True dtna
XM_039815791.1 mRNA upstream 54300 21848903 ~ 21868166 (-) False dtna
XM_039815804.1 mRNA upstream 54300 21848903 ~ 21867948 (-) False dtna
TU157096 other downstream 774730 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 1989590 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 2319919 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 2562573 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 2849822 18931974 ~ 18935477 (-) True LOC120568972
TU157655 other upstream 467395 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 468520 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 1635763 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 1674017 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 2073349 23867952 ~ 23868025 (-) True trnai-aau_23

Expression Profile