RNA id: XM_039816757.1


Basic Information

Item Value
RNA id XM_039816757.1
length 3214
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC120568980
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31431806 ~ 31453460 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaaagctgaatgctaaatcggtgaagtatccctttaagtaaagCGAGGGACGGGACAGAAGCAAGAAGCATTCAAtatgtgaataaataaatgagcagAACGCCTTCAAATACACCTAGATACACATCCTTAGTGCTGATGTTCAACTCACAAGTTTGAATAAAATGCCATCAGTTGAAAGCAGAACAAAAAGCTCCCGCACTTCCACCGTCGGAACCGAATCCGTGTGACACCCAGCGGAAGTAAACAACACAAGTACCCGTGGCGGTAGCTATGGGCGGTAGCTGCATGCTGCTGCTGACTAGTGCAGGTCATTCTTTCAGCTGGAACTAAGCAACGATGTCTCCAGTTGAGTCTCTGAGAGAGTTTGTCACCGAGCgactaactgctgctgctgaagaaatCTTCCGAGTTGTTGAAGAAACTATCGCCGAGTACGAGAAGGAGATCGCTCGGCAGCGCAGACTGCTGGAGCTCGTTTGGAAACCCGAAATCAAGTTACACAGGATAGaGCTCCCACAGCAACATGTCTGTAAAGAGGAGGAGATTCTCGCTGACCAAGAGGACTCAGAGCTTCCAcagattaaagaggaacaggaggaactgtgcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGAACATGACCACAGTGAAGGTCAGACTCTGACCTTCAATCCTGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTAATGATGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCATCACGTAATGCAGAACTAGAACCAAAAAAGAGACATCACAAGAGCAGTAGTCACAGTAATAATGTAAACAACACTAACTTGTCAGAGATCCACTGTAATACTCAAACAGGTAAACAGTCTTTCATATGTGACACATGTGGGAAAGACTTTAAGTATAATTCAGCATTTCAAAGACACTTGAGAgtccacacaggtgagaagccatATTCTTGCAAAACATGTGGAAAAGATTTTGGACGTAGAAATCACTTGGAAATTCACATGAGAACCCACACAGGTGAGAGGCCGTACGTTTGCAAGATCTGCACTAAAACATTCTGTGATGTCTCAGCATTAATAAGGCATATGAAAATCCACACCGGTAAGAAGCAATATTCTTGCAAAACATGTGAAAAAGATTTTGGACGATATGATGAATGTAAAGaccacatgagaatccacacagatGAGAAGCCGTATGCTTGCAAAACATGTGAAAAAGGTTTCAGACATAATAGTACATTATTGGCCCACATGAGaacccacacaggtgagaagcccTATTTTTGCAAAACATGTCAAAAAGATTTCCGGCAATATAGTGCCTTGGTGGTCCACATGAGaacccacacaggtgagaagccatATTCTTGCAAAACATGTGGAAAACATTTTCGACAAAATAGTGCATTGTTGGTACACGTGAGaacccacacaggtgagaagccatACATTTGCAAGACCTGCAGGAAAAGATTCTGTGACCCTTCAGGCTTATTTAAGCATATGAGAGTCCACACAAGTGAAAAGCCGTACGTTTGCAAGACCTGTGGGAAAAGATTCTTTGTTGATTCAGCATTGAAGAGGCATGAGAattcacacaggtgagaagctgTTTTCTTGCAAAACATAGAAAAGATTTTGGACAGAATAGTGGCTTGTTGGTCCACATGAGAACCCATACAGGTGAGAAGCTGTACGTTTGCAGGACCTGCCGGCAAAGATACTGTGACACTGTTAATAAGGCATATGAGAACCCATACAGGTTAAAATCTAAACTAATATTGATCCCTGGCCTCTGCAGtctacatgtcaaagtgtccttgagcaagtcactgaaccccaaattgctcctgATGGCTGTGCCAttggtgtgtaaatgtgtgtgaatgtttatctcatgagcaggtggcaccatGTATAGTAGCTAGAGTAGGAATGTGTGTTAATGGGGTGAATGGTGCCTGTACTGTATGAAGCAATTTGTTGCTAATGATGTAAACTTTATGCTTGTTGgttttgaaaaatgtccatttaCAAAGTATCTCAGGATCACTTGTAGTTTAAAGTTTAACAAGGACTTATTCATGTGACCAGGATTAGTGTTTGATAGTTCTATATGAAGCCTCCTGCACATCTTTGCAAGAAGTTTTTAATTATCGTATAAGAAGTTCTATTAAATGGGAATGTGCCTTCTTCTTGCtatttttaaacactagcttTTGTTTCTGACCAGATTCTTGTTTGATAAATGACAAATGATTGAATTTGTTTTTATCAGACTGTTTTGAAGAGTGTAATCAACTATGGAATGACTGCATGGTTTTGGAACCttgtatatctatatctattacCTATTTATTATTATCAAAATAAGTTAATGATTATTTGGTAAAGAAAGAAGTATGTTTAGGATCCCCAAAACACAGATTAATacactttaaaaacacacaatgaTCTAACcaacaaaatgaacaagaatTAACTTAAAATAGCCCTAGTCTTATATGATTTAACAGGAGTTATGAGGAAACAGTGTTGAGATTTATAATAACCTAACTTTCTGTATTGATCAAAGTATAGTATTAcaggtattttatctgctgaaccgttaacatttggaaaaaaacaactgattTAATTGTGCAAGCACATtactttcctttcatttgttttaaattcaacgagcaatgtgttgtattttagcagaatactgaaagcagcagaaaggcagaactgagtacgctttaaaatctgtttatttatcacaagtaaTATCATTATGGTGATATTCAACAACCTTAGggcatatcgcatattttcctcatatcgtgcagccctaataactaCCTTGAAATTGCAGAATAGTGTTGCAAaattttcatctgtatcatCTTTTAGTGTAATTTGTTTATGTTAATAGTTATTTCTTTCTAAATTATGTGATAATGTTATGTAGGCTAGTCATTGTTTTCCTCTTCATTCGACTAGTTTATTACTGAACCCAGCATAACGTGCCGCGCCGTCACATCATGCAccacccaccaccacaagttaactctcaacctgtgggaaacactacatacaaataaacatgtacataatttc

Function

GO: NA

KEGG:

id description
ko04144 Endocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160668 lncRNA upstream 2948 31428653 ~ 31428858 (+) True G119253
TU160667 lncRNA upstream 3226 31428377 ~ 31428580 (+) True G119252
TU160659 lncRNA upstream 23920 31407228 ~ 31407886 (+) True G119244
TU160647 lncRNA upstream 47571 31383939 ~ 31384235 (+) True G119232
TU160643 lncRNA upstream 69767 31361837 ~ 31362039 (+) True G119228
TU160670 lncRNA downstream 328 31453788 ~ 31454417 (+) True G119255
TU160681 lncRNA downstream 16134 31469594 ~ 31472518 (+) True G119264
TU160682 lncRNA downstream 22105 31475565 ~ 31475847 (+) True G119265
TU160684 lncRNA downstream 23626 31477086 ~ 31489836 (+) True G119266
XR_005640768.1 lncRNA downstream 155511 31608971 ~ 31610761 (+) True LOC120568739
XM_039814660.1 mRNA upstream 420482 31007722 ~ 31011324 (+) True LOC120567691
XM_039816208.1 mRNA upstream 754454 30569095 ~ 30677352 (+) True LOC120568595
XM_039816206.1 mRNA upstream 788168 30569095 ~ 30643638 (+) False LOC120568595
XM_039816207.1 mRNA upstream 788168 30569345 ~ 30643638 (+) False LOC120568595
XM_039816413.1 mRNA upstream 1213084 30101634 ~ 30218722 (+) True LOC120568730
XM_039816635.1 mRNA downstream 407270 31860730 ~ 31865235 (+) True eif3f
XM_039814661.1 mRNA downstream 413527 31866987 ~ 31869495 (+) False dnaaf6
XM_039814662.1 mRNA downstream 435448 31888908 ~ 31914575 (+) False pip4p1a
XM_039816640.1 mRNA downstream 475685 31929145 ~ 31939478 (+) True LOC120568893
XM_039816638.1 mRNA downstream 488743 31942203 ~ 32016352 (+) True lig1
TU160516 other upstream 231792 31198960 ~ 31200014 (+) False G119123
TU160502 other upstream 235573 31171217 ~ 31196233 (+) True G119114
TU160411 other upstream 856925 30569395 ~ 30574881 (+) False LOC120568595
TU160295 other upstream 1461956 29968413 ~ 29969850 (+) False LOC120567689
TU159791 other upstream 3272217 28156973 ~ 28159589 (+) False LOC120568082
TU160672 other downstream 6404 31459864 ~ 31460908 (+) True G119257
TU160764 other downstream 412295 31865755 ~ 31868793 (+) True dnaaf6
TU160769 other downstream 435468 31888928 ~ 31912607 (+) False pip4p1a
TU160818 other downstream 614152 32067612 ~ 32071300 (+) False LOC120567694
unassigned_transcript_563 other downstream 672897 32126357 ~ 32126430 (+) True trnar-ucu_14

Expression Profile