RNA id: XM_039816791.1


Basic Information

Item Value
RNA id XM_039816791.1
length 3774
RNA type mRNA
GC content 0.49
exon number 25
gene id dpydb
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9048166 ~ 9064521 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTGATTTAACCAGAGCTCAAGAGCAATACACCCAGAAACAAGTCCGCTGTCCAGTGCTGCGCTGAACTTCGATCCACAGAGAGTGACATAAGCTTCCTTATCGACTGAGTAGTCGGAGAAAAGACAACATATGGGGGCTTAAACAGTCAGTTTGTTGTGTAACGGTCAGTGAGAGCAGTGGGCCTGATAAGGACGGTCAGCTCTCAGACAGTTGAACTTGGGAGCGGAGCAGTCCCGGACAGTGCTTCGGACCTCTAATCCAAAAGCCAAAAGATCTTCAGAAAGCTTTCGGAAGCTTTCATTCCCAAACCAGACAGAATCATGTTGAGTAAAGACCCTCCAGACATTGAGAGTATCCTGGCTCTGAATCCCAGGGTGAAGAGTCATGCTCCAATTATATCCACAGCgagcaaaaagaaagaaaagaaacactggAAGAGAAACCCTGAACATAACTGTAATTCTTGTGTGAAGTTAGAGAACAACTTTGACGATATCAAACACACAACGCTGAGCGAGCGCGGAGCACTACGGGAAGCAATGAGGTGTCTAAAATGTGTGGATGCTCCCTGTCAGAAGAGCTGCCCTACTAACCTGGACATAAAGTCATTTATTACAAGCATCTCTACTAAGAACTACTATGGGTCAGCGCGAGCCATCCTTTCTGACAACCCCCTGGGTTTGACCTGTGGAATGGTGTGTCCCACATCAGAGCTGTGTGTGGGCGGCTGCAACTTGTATGCTTCTGAGGAGGGACCCATTAATATCGGGGGGCTACAGCAGTTTGCTACTGAGGTGTTTAGCAAGATGGGCATCCCTCAGATCAGAAATCCTGACCTGCCACCAGCCAATGAGATGCCAGAGTCTTACCATGCCCCTATAGCTCTAATTGGTTGTGGCCCAGCATCAGTCAGCTGTGCCTCCTTCCTGGCCCGTCTTGGATATGATAATATTACCATATTTGAGAAACAGAAGTACATTGGAGGCCTAAGCACATCAGAAATCCCTCAGTTCCGGCTTCCCTATGAGGTCGTCCAGTTTGAAATAGACCTGATGAAGGATTTGGGAGTCAAGGTGGTGTGTGAGAAAGGTCTAGGTGTTAATGGAATGACTTTGACATCCCTGAAAGAAGAAGGATTTAAATCTGTCTTCATCGGGATTGgtcTCCCTCAGGCCAACAGAGCTCCAATTTTCCAGGGTTTAACTATGGATCAAGGTTTCTTCACTTCTAAAGACTTTCTGCCCATGGTGGCCTCAGCCAGCAAGAAAGGTATGTGTCAGTGTCGCTCCTCTCTGCCAGAGATAAGAGGTATGGTGATAGTTTTGGGGGCCGGCGACACTGCGTTTGACTGCGCCACCTCGGCTCTTCGCTGTGGAGCCAAGAGAGTCTACGTCTGCTTCAGGAAGGGATTCACTAACATACGGGCTGTTCCCGAGGAGatGGAGTTAGCTAAGGAGGAACGGTGTGAGTTCCTGCCCTTCCTGTCTCCCCGTGAGGTCATCATGAAGAACGGTCGGGTTGCCGGGTTACAGTTCTGTCGCACCGAGCAGACTGACGAGGGCGATTGGAAGGAAGATGAGGACCAAATTGTCAGGCTCAAGGCTGATTACATCATCAGTGCCTTTGGTTCTATGCTCAACGAGCCTCGAGtgAGTGAGGCCATGGCTCCGGTGAAGATGACCCGCTGGGGTACTCCAGAGGTGAACACCGACACCATGCAGACCAGTGAGCCCTGGGTGTTTGCAGGAGGAGACATTGCTGGTTTGGCGAACACCACGGTGGAATCAGTGAACGATGGCAAACAGGCTTCATGGCACATTCACAGATACATTCAGTCCCTGCACGGACAGACAGTGGACCCAGTTCCGAAGCTGCCGTTGTTCTACAGTGCTATAGATCAGGTGGACATCAGCGTTGAGATGTGTGGGATAAAGTTTCCCAACCCGTTCGGCCTGGCATCTGCCCCTCCCACCACCAGCACAGCTATGATCAGAAGAGCTTTTGAACAAGGATGGGGCTTCGCTTTAACGAAGACATTCGGACTGGATAAGgATCTGGTGACCAATGTTTCTCCTCGTATTGTGCGTGGCACCACCTCAGGTCATTTGTTTGGACCAGGTCAAGGCTCCTTCCTCAACATTGAGCTCATCAGTGAAAAGACAGCAGCCTACTGGTGTCTGTCAGTCGCCGAGCTGAAGAGGGACTTCCCTAATAATGTGGTGATCTCCAGTATAATGTGTAGTTACAACAAGGAAGATTGGACAGAACTAGCCAAGATGGCCGAGgaaTCAGGAGCAGATGCATTGGAGCTGAACCTGTCTTGTCCTCATGGGATGGGGGAGAGAGGAATGGGTCTGGCCTGtggacagGACCCGGTGTTGGTGCGTAACATCTGTCGCTGGGTGCGTGCAGccatttccattccattctTTGCCAAACTGACACCAAATGTGACCAATATTGTCGACATCGCCAAGGCTGCTCATGAAGGTGGAGCAGATGGAGTAACAGCCACGAACACAGTCTCAGGTTTGATGGGActgaaggccgacggctcccCCTGGCCGAGTGTTGGAACAGACAAACGCACCACGTATGGAGGGGTGTCTGGTAATGCCATCAGACCCATCGCTCTCAGAGCAGTATCAGCAATTGCCAAAGCAATTCCTGGTTTTCCTATTCTGGCCACCGGAGGTATCGACTCGGCAGAGAGTGGGCTACAGTTTCTTCACGCCGGAGCCTCAGTGTTACAGgtgtGCAGTGCAATACAGAACCAGGACTTCACAGTGATTGAGGATTACTGTGTGGgtctgaAGGCCTTGTTGTACCTGAAGAGCCTGGAGCTGAAGGACTGGGACGGTCAGTCTCCTCCAACAGAGAGACATCAGAAGGGAAAACCTGTTCCCAGACTGGAAGACCTAGTGGGAAAGagccTCCCTAGCTTTGGTCCATACCTCCAGCAGAGGACATACGCCATCGCCGAATACAAGAAAAAGCTTAGAAACAACAATGATGATGTGATAAAAGCCGACATCCGCCAGGTCAACACGCCCCAGAAAGCCGTCCCTGCTGTCAAGgaCGTGATAGCCAGAGCGCTGCGCCACATTGGAGCATACCAAGATCTAAACAACATGGAGCAGGTCCAGGCTCTGATAGATGAAGAGATGTGTATCAACTGTGGAAAATGTTACATGACTTGCAATGACTCTGGATACCAGGCTATAACATTCCACCCAGAGACCCACCTTCCCATGGTGAATGACAGCTGCACGGGCTGCACTCTGTGCCTCAGCGTCTGTCCAATCATAGACTGCATCACTATGGTTACCATGAAAAAGCCCTATAAACCCAAGAGGGGTGTGCCCATTAGTCCTGTCTGCTAAAGGGAAAGACAAAACCAAAACCATCCACATATGCAATAACGGAGACAAATAAATCTGTCAAATGAGGTTTGACATTTGTTGTGTTCCATTAATGCAAGTCACTCATGACGTAAAGGCTTCAAAAGTGGCAGAAAAATGATGTGTTTATCTGCTTTATATAGAAGAAGAGGTTATGAAAAATGTAGTCTTGATTTTAATACTAGCACCATTGATCCCActggagaaagaggaaggtcaCGGTTCACAATAATGGTATCACAATTAATTACTCAATAATTTAACTGTAATAAGCAATTGTGGATTCtgctttattgttattactctGTAAACACTTAAAGTTACTTGTGATGATAGATCATTTCTATAATTAAATGTGTATTTACTGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006222 UMP biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004158 dihydroorotate oxidase activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152567 lncRNA upstream 1738 9037893 ~ 9046432 (+) True LOC120569003
XR_005640818.1 lncRNA upstream 1738 9037959 ~ 9046432 (+) False LOC120569003
XR_005640819.1 lncRNA upstream 1738 9038200 ~ 9046432 (+) False LOC120569003
TU152539 lncRNA upstream 38372 9009031 ~ 9009798 (+) True G113148
XR_005640769.1 lncRNA upstream 78973 8967470 ~ 8969197 (+) False LOC120568741
TU152638 lncRNA downstream 88480 9153001 ~ 9162545 (+) True G113240
TU152679 lncRNA downstream 192802 9257323 ~ 9257583 (+) True G113273
TU152680 lncRNA downstream 204826 9269347 ~ 9269547 (+) True G113274
TU152730 lncRNA downstream 309928 9374449 ~ 9375105 (+) True G113290
XR_005640716.1 lncRNA downstream 402777 9467298 ~ 9469320 (+) True LOC120568401
XM_039816786.1 mRNA upstream 11476 9028557 ~ 9036694 (+) False odr4
XM_039816787.1 mRNA upstream 11476 9028578 ~ 9036694 (+) True odr4
XM_039816790.1 mRNA upstream 11476 9028590 ~ 9036694 (+) False odr4
XM_039816788.1 mRNA upstream 11476 9028763 ~ 9036694 (+) False odr4
XM_039816141.1 mRNA upstream 52014 8989441 ~ 8996156 (+) True prg4a
XM_039816606.1 mRNA downstream 1064 9065585 ~ 9070253 (+) True LOC120568868
XM_039816605.1 mRNA downstream 1064 9065585 ~ 9070253 (+) False LOC120568868
XM_039816607.1 mRNA downstream 1064 9065585 ~ 9069887 (+) False LOC120568868
XM_039816403.1 mRNA downstream 7115 9071636 ~ 9093276 (+) True LOC120568720
XM_039816404.1 mRNA downstream 7184 9071705 ~ 9093276 (+) False LOC120568720
TU152519 other upstream 45602 9001890 ~ 9002568 (+) True G113130
TU152498 other upstream 146563 8895927 ~ 8901607 (+) False pdca
unassigned_transcript_548 other upstream 154114 8893982 ~ 8894056 (+) True trnan-guu_7
unassigned_transcript_546 other upstream 157811 8890286 ~ 8890359 (+) True trnan-guu_5
unassigned_transcript_545 other upstream 165383 8882714 ~ 8882787 (+) True trnan-guu_4
unassigned_transcript_550 other downstream 473559 9538080 ~ 9538151 (+) True trnaq-cug_7
unassigned_transcript_551 other downstream 474155 9538676 ~ 9538747 (+) True trnaq-cug_8
unassigned_transcript_552 other downstream 474610 9539131 ~ 9539202 (+) True trnaq-cug_9
unassigned_transcript_553 other downstream 475359 9539880 ~ 9539951 (+) True trnaq-cug_10
unassigned_transcript_554 other downstream 476620 9541141 ~ 9541212 (+) True trnaq-cug_11

Expression Profile