RNA id: XM_039816798.1


Basic Information

Item Value
RNA id XM_039816798.1
length 2671
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC120569005
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26792202 ~ 26813425 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCATGTGTGTTGAGGCGCATTATTTGGCAACAGACGCGGCAGTGGGGAGGGCCGAAAAAAGAGGATATCccctggatttaaaaaaagcaacgaTTTATCGAGGTTAACTGCAGATTAAACATTCCTTGGTCGACCATCGGTGAAGAACGGGCGACAAAGCGACCGAGGGATGTCTGAGGAGGCTGTCCGCCAGACACGCAGCCAGAAGAGGGCGCTGGAGAAGGATGCTGCTCCGCAGTCTATAGAACTCTCTGACGCTGACAGTGAAAGCAAAAAGCCTAAATTGGACACAtctgaagccacaacacagGAACAAACTGAACTTGAACCCGACCCTGTTCTGGCACATGACGATCCGAGCCGGACTATGGTTGGATCCGAGCACGAGCAAGAGCAGGAGAAGAGCCGGTCGCCATTATCTTTAGCGTTACCTTTGGCCTCTCAGCCGGTGAAGCAGGATCAGGAGCGGGCCCGACAGACGATGGTTGAACCCCGCTCAGACAATCGGACTGACTGCAACGACAGAGCCAGCAAGGTGAAGACTGAGCCAGCTGTGGATACAAGGAGCCAGGTCCGACCGACGGAGCCAAAGGCGCCCGGTGGCATGCTGGCTGCGGGCGAGGTGAAGGCCACCATTAAAGTGGAAGTTCAGACGGGAGAGCAGCCTGTGGACATGAGCACCTCCAGAGGCAGTATAAAAAGAGAGAAGCGCCCTCCGTCCCCTGAAGATGACGATGTCATCATCTTGTCCGATAATGACTCTCCCAGTCCACCAATGAATGGCTTGAGCCACTTTAAGGAGCTGGACACAGACCTGCTCATGAAGAGCAGCCCAATGGAGAGGGAGCGCATCATTAAGCAGCTGAAGGTGGAGCTGAGACTGGAGGAGGCCAAGCTGGTGCTGCTGAAGAAACTTCGACAGAGCCAGATACAAAAGGATACTCTCCAGAAGCCCTCAGGTCTTTCCGGCTCCtcggctcctcctcctctcattcgGGGAACAATTACAAGCAATAAAGGCTCTCCGCAGATTTTGACAGGCAGGAGTTCAGGCACAGTGATCCCTCCGCCGCTGGTGAGAGGAGGCCAGCAGGTGTCGTCCAAACATGGCTCCCAGATCATAATGCCGCCTCTGGTCAGAGGGACACAGCCCATCTCTGTATCTCCACAGCAGATCCAGGCTCtgcgccagcagcagcagcagcagttggcTGCCTCTGGAGGCTCAGGACCCCCCCCTCTGCTGTTGGGCTCCAGGACCTCAGCCCCTGCAAGTCACGGCCAGAGAGGCATGGCCCACTCAGGCCTCATCAGGATTGGCAGTAGTGCCAACACACTGGCCTCGGCATCCAGTTTGAAGGGCTCTTCCTCAGGAAGCAGCGGCGTGTCTGTGGTTAGCGTGAATGACTCTCCAGCCAGCCGCCAAGCTGCAGCCAAACTCGCCCTGCGGAAACAACTGGAGAAGACCCTACTGGAGATTCCCCCACCCAAGCCCCCTGCCCCAGAGTTTAACTTTCTGCCATCTGCTGCCAATAATGAGTTCATCTACCTGGTGGGACTGGAAGAAGTGGTACAGAATCTGCTGGATACCATCCACAGAGGAAAGACAGGTGTAGCACTGTCCAAGACCATTACCAGAGACCCCTTCACCTGCACCCAGTGCAAAACCGACTTCACCTGCCGCTGGAGGCACGACAAGACAAAAGGCGGGACAGTCCTCTGTGAACACTGCATGTCTTCCAatcaaaaaaaggttttgaaagcTGAGCATACCAAGAGGCTGAAAGCTGCGTTTGTCAAAGCCCTGCAACAAGAGCAGGAAATCGAGCAGCGTATTTTTCAGCAGACGTCCTCACCGGTCTCCCACAGTAGCTCCTCGTCCTCTTCGTCGATGAAAGCCGAGCAGCTGGTGTCCCAGCAGCTGAAGCAGGCTCACGCCAGAGCATCCTCCCAGCACCTCCACCAGGCCAGCCGAGGAGCCAACATGGTTCACCATCACTCCGTCAAGCAGAGCTCCCAGGGCCAGCTGTCCCATGGTGCCTCATCATTGGGGGTGAGGGGCGTCCCCcactccttctcctcctcctcccagctgcAGAGTGCAGTGGCGGCTGCAGCTTTGGTCAGCCGGCCAGGTAAGAATGCCCACGTTTCCCTGCGCTCTGTCCAGAGTTCAAAGGTGAGCAGCAGTGGAACCGCCGGCGGCAGGAATATCAGCGGAGGTAGTGCCTCATCCACTGCATGGAAGAAGCAGAGCAACAGCAACACAGGAGTCACTATGGCCTACGTGAACCCCAGCCTGACAGGTCACAAGTCGTCAGCCAGCGCCGACGCTCGTCAGAGGGAGTACCTGCTGGACATGATCCCCTCTCGCTCGTCGATCTCGCAGACTGCAAACACATGGAAATAATTCAAGTAATACTCTTGTGCTATTTTTGCTTTTCTCCAAGTTCCTCAGCTCCAATAATATGGTCAgcagcaacccccccccccggacGACTGTTCAGCAAATCCAATCTGTCAAAGTGGAGAAACGTTCCTTCTGTATGATTGATTGTTGTTttaattttcttattttctgttgtTTATTTTGAGATTCGCTGTTCTTTGGTAATTGCGCAGAAACAATTTTGATTTGATTGGGGCAAAGAAAAAACTAATACTTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159256 lncRNA upstream 7343 26783045 ~ 26784859 (+) False LOC120569008
XR_005640820.1 lncRNA upstream 7478 26781368 ~ 26784724 (+) True LOC120569008
TU159272 lncRNA downstream 7818 26821243 ~ 26824078 (+) True G118164
TU159273 lncRNA downstream 7818 26821243 ~ 26824078 (+) False G118164
TU159356 lncRNA downstream 41217 26854642 ~ 26857394 (+) False LOC120567599
TU159368 lncRNA downstream 65130 26878555 ~ 26938821 (+) False LOC120568791
TU159409 lncRNA downstream 155079 26968504 ~ 26968990 (+) True G118263
XM_039815839.1 mRNA upstream 119944 26666504 ~ 26672258 (+) True zgc:85843
XM_039816625.1 mRNA upstream 192268 26590782 ~ 26599934 (+) False prkab2
XM_039816624.1 mRNA upstream 192268 26590796 ~ 26599934 (+) False prkab2
XM_039816626.1 mRNA upstream 192268 26591010 ~ 26599934 (+) False prkab2
XM_039816370.1 mRNA upstream 203631 26580603 ~ 26588571 (+) True LOC120568699
XM_039815551.1 mRNA downstream 2259 26815684 ~ 26819017 (+) True ndufa13
XM_039814505.1 mRNA downstream 25753 26839178 ~ 26854873 (+) True LOC120567599
XM_039814509.1 mRNA downstream 77510 26890935 ~ 26899765 (+) True LOC120567603
XM_039814510.1 mRNA downstream 77510 26890935 ~ 26898854 (+) False LOC120567603
XM_039816497.1 mRNA downstream 90116 26903541 ~ 26938882 (+) True LOC120568791
TU159241 other upstream 22291 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 192130 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 374194 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 390124 26395426 ~ 26402078 (+) True G118011
TU159378 other downstream 70134 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 788599 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1343548 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 3154988 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3755970 30569395 ~ 30574881 (+) False LOC120568595

Expression Profile