RNA id: XM_039816804.1


Basic Information

Item Value
RNA id XM_039816804.1
length 2191
RNA type mRNA
GC content 0.46
exon number 9
gene id armc6
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26777037 ~ 26781098 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATAGATATGGAGCTTCCCTCTTCTTGATATTAAACattctagctaacgttactccATTTGTAATGTTTTCCCTTTTCGTGACCCCGGTGATAAACTAACGGTTAAATCGTTGTCTTCAGGAGAAACGGAATTACTGGAACTAATGTTTTGCAGTCTGAGTCCTAACCGAGAATATGTATGAGTGGGACCTTTTGCGGAATTTACTATTCACTTAAAAATTTCCGTCCAATTCCCGCCCCGCGCTCATGGCTGAGAGCTGAAGTAGCGTGCACAACGACTACGGAAAtggaagAACGTCGTGATAtcgcgagaatccagctgccgtgcaagTGGAGATTAACTGGCGAAAATGGCGAAGCGGAGGATCACACAGGAAACCTTTGATGCTGTTGTCAGGGAAAACATGGAGGAGTTTGAGATGGGTCCTGATGAGGCTTTGAATGAGGCTGTGGAGCAGTTTGAGTCTCAAGGTGTGGACCTCAGCTATATAGTAAAAGCTGTAGCAGCTGTATCATCTGATGACAAACAAGAAGAGCAATCACACAAGGTCTTACAGGCTTTGGATTCCCTCCGCATTGGAAAAGACTCTGCCAGTGTTAAGGAAGTGACTGCAGACATAAAACGCTTCACTGAGCATTGCTCACTTGAATTCGCCCAGAGGTACCTGGCTGCCCAAAAAGACGCCTACCCCGTCATCCTCTCTTACTGCCAAAAGAGTGTAGAGGAGCAGGAAGCTGTGTTAACCGCCCTGGCCGCTCTGGCTGCGCTGACCGATGGACAGCCGGACTTGTTGGATGCAGAGGGCCAGCGGTTCCTTTTGAATGTCCTTAAGAAGTACGAGGCAGATTCCTCTGTGTTGCGTGTAGCCATTTGCACTGTGCGTCACTGCTGtttgaaacatgaacaaaacaGGCAGGATTTGGTAAAAGGTGGCGTCCTGCCTCTGCTGACCGGTGCCACCGCACAACACAGTGGATGTGCTGAGCTGGTCAAGGAGGCCTCTGCTGCTCTCAGGATCATGACCTTTGACGATGATATCCGAGTTCCGTTTGGGCAAGCTCATGAACACGCCAAGATGATTGTTCTTCAACACAATGGACTGAAGGTTTTGATTGAGTCTGCAAAAGCTCACCTCGGTAATACTTCTGTTCTGAGAGAGCTGTGTGCGACTTTGTCCCATTTGGCTGTAAGGAATGAGTTCTGTCAAGACATCTGTGATCTGGGAGGACTGAAACTCATCATGACGCTGCTTGCGGAGAGCTATGAGACACCAGAGTTGGTTCGGCAGGTCCTTAGTGCAATACGAGCCATAGCAGGAAATGATGACGTGAAAGATGCAGTTGTTAATGCTGGTGGAGTCGAGCTCATTGTCATTGCCATGAACAAACACATGAACATCTCTGCTGTGTGTGAGCAGGGCTGTGCATGCCTCTCTGTCCTTGCTTTGCGTAAACCAAACAACTGCAAAGTCATCATGGAAAATGGAGGTGCCTTGGCTGCTCTGCAGGCTATGAAGACTCATACTGATAAGGTCAATGTGCAGaAACAGGCATGTATGCTGTTGAGAAATCTGGTTTCACATATGAGTAACTTAAGCCAACCAATCCTGGAGATGGGAGCAGAGGCCCTGATAACCCAGGCCCTGCAGACCCATGAAGACTGTGGTGACGTGGGTAAAGCAGCCCTCAGAGATCTGGGATGCCACGTGGAGCTCCGAGAGCTGTGGACCGGCAAAAAGGGCAGCCTTACCTACTGAAAGTAGAGGAGAGCATCGCTGTACACCCTTACCATAAGTTTGCCTGAAAAGCAATTTAAGGCAAGATGAAATGTTATCTTGGTATACATTGCCAAGAGTTTAAGCAGATACACCTACCCAACTAGACATATTTGTTTAAAGTAGTTGATGTAGAAAAGGCTTGTGAGTAAGTCACCAGTCCCACACAACGCCTTTTGAGAGATTGAATGTTTTCCAgtcctttttctgtttttgacaTGTAGCCTACAAAGAGGTCCTTGTAGTGCTGTAGTACatgttttgtttgatattaaatttttttttttacaaattttcTGATTCGCAATTTCATATCTGTTCCGCATTTATGTTAATAAGATGTcaatatgtgtgttttgtggcatgggtaaatataaataaatctaTTTGCTGTCATGCAAATAGTTTAACAGTA

Function

GO: NA

KEGG:

id description
K24166 ARMC6; armadillo repeat-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159313 lncRNA downstream 44953 26731877 ~ 26732084 (-) True G118186
TU159297 lncRNA downstream 111856 26661621 ~ 26665181 (-) False G118175
TU159275 lncRNA downstream 175652 26532167 ~ 26601385 (-) True G118165
TU159153 lncRNA downstream 297359 26477463 ~ 26479678 (-) True G118076
TU159151 lncRNA downstream 302081 26473887 ~ 26474956 (-) True G118075
TU159466 lncRNA upstream 179302 26960400 ~ 26963105 (-) False G118308
TU159467 lncRNA upstream 179302 26960400 ~ 26963752 (-) True G118308
TU159486 lncRNA upstream 298909 27080007 ~ 27142908 (-) True G118321
TU159494 lncRNA upstream 337934 27119032 ~ 27190233 (-) True G118328
TU159504 lncRNA upstream 393454 27174552 ~ 27197648 (-) True G118337
XM_039816806.1 mRNA downstream 4092 26765481 ~ 26772945 (-) False LOC120569007
XM_039816805.1 mRNA downstream 4092 26765481 ~ 26772945 (-) True LOC120569007
XM_039816685.1 mRNA downstream 61602 26674033 ~ 26715435 (-) True LOC120568933
XM_039816684.1 mRNA downstream 69402 26674033 ~ 26707635 (-) False LOC120568933
XM_039815099.1 mRNA downstream 146928 26604861 ~ 26630109 (-) False LOC120567967
XM_039815550.1 mRNA upstream 40131 26821229 ~ 26824570 (-) False cirbpa
XM_039815549.1 mRNA upstream 40131 26821229 ~ 26824570 (-) False cirbpa
XM_039815548.1 mRNA upstream 40131 26821229 ~ 26824570 (-) False cirbpa
XM_039815547.1 mRNA upstream 40131 26821229 ~ 26824570 (-) True cirbpa
XM_039816645.1 mRNA upstream 44618 26825716 ~ 26833382 (-) True LOC120568902
TU159298 other downstream 111085 26661621 ~ 26665952 (-) True G118175
TU158687 other downstream 1853719 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 2240541 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2755536 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2756599 24020362 ~ 24020438 (-) True LOC120569137
XR_005640672.1 other upstream 38740 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 889878 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 932369 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 936453 27717551 ~ 27718759 (-) True G118524
TU160079 other upstream 2204993 28986091 ~ 28986319 (-) True G118764

Expression Profile