RNA id: XM_039816809.1


Basic Information

Item Value
RNA id XM_039816809.1
length 729
RNA type mRNA
GC content 0.49
exon number 6
gene id sdhc
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32118953 ~ 32124498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGGATTTAATTTATGTAACCGGTCAGAACAACAACATCCGTCAACGTCACTTCCGTTCACCGCTTGTCAAACATGGCGCTGCTTCTAAGGACGTTGGCCCGACAGGGTGTCTGTCTCTCTAGACCCTGTGTTGCCCAGAGTGTCTTCTATAGACaTGCTGCTCCAATGGGAACCACAGCTAAGGACGAGATGAACAAGTTTTGGGCCAAAAATTCCAAATTAAACAGACCCATGTCTCCTCATCTCACCATTTACAAaTGGTCTGTCCCCATGGTGATGTCCATCACGTTCAGGGGAACTGGAGTGGGACTCAGTGGAGctATCTCAGCCTTTGCCTTGGCAGCGCTGGTATTACCGGAAAGTTACCCCTACTACCTGGACTTGATCCACTCGCTATACGTCGGCCCCTATCTCATTGGGTTGGCCAAGTTCGGCCTCGCCCTCCCTGTGTCTTTCCATACCTATAATGGCATCCGCCACTTGTGTTGGGACCTTGGCAAGGGCTTCAGAATCCCAGAGGTGTACCGCACCGGCTACACAGTTATTGGTCTGTCCATCATCACCTCCCTCGCACTGGCTTACCTCTGAGCAGAGAACGAGAAGAGATGAGCAGAAAGGAAGGGAGAGGGGGAAGTCAACGGGAATGTGGACTGGATTCACTGTGGCAGTTTTGTGCATTTGTTCTGGTTTCATCAAAGTATTAAATAAAGGATTATATTATACTGTA

Function

GO: NA

KEGG:

id description
K00236 SDHC, SDH3; succinate dehydrogenase (ubiquinone) cytochrome b560 subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640633.1 lncRNA upstream 59580 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 203352 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 204249 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 275982 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 387663 31730145 ~ 31731290 (+) True G119306
TU160858 lncRNA downstream 66 32124564 ~ 32124915 (+) True G119398
TU160878 lncRNA downstream 216627 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 223623 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 240068 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 248065 32372563 ~ 32403711 (+) True G119417
XM_039815958.1 mRNA upstream 3006 32075076 ~ 32115947 (+) True LOC120568430
XM_039814663.1 mRNA upstream 47641 32067563 ~ 32071312 (+) True LOC120567694
XM_039816191.1 mRNA upstream 67518 32031653 ~ 32051435 (+) False mpz
XM_039816189.1 mRNA upstream 67520 32031652 ~ 32051433 (+) True mpz
XM_039816190.1 mRNA upstream 71310 32031652 ~ 32047643 (+) False mpz
XM_039815394.1 mRNA downstream 3960 32128458 ~ 32216046 (+) False cadm3
XM_039815393.1 mRNA downstream 3964 32128462 ~ 32222813 (+) False cadm3
XM_039815392.1 mRNA downstream 3965 32128463 ~ 32222813 (+) False cadm3
XM_039815395.1 mRNA downstream 3969 32128467 ~ 32222813 (+) False cadm3
XM_039816142.1 mRNA downstream 107710 32232208 ~ 32325647 (+) True kirrel1b
TU160818 other upstream 47653 32067612 ~ 32071300 (+) False LOC120567694
TU160769 other upstream 206346 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 250160 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 658045 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 918939 31198960 ~ 31200014 (+) False G119123
unassigned_transcript_563 other downstream 1859 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 64482 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 64574 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 328207 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 328207 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile