RNA id: XM_039816810.1


Basic Information

Item Value
RNA id XM_039816810.1
length 3742
RNA type mRNA
GC content 0.46
exon number 10
gene id espnlb
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24200243 ~ 24209452 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGAAGCTGGCTAGCTTAGCATTAAGGCTGGAAATGGGGACATACTAGCCTCTATCCGTATATAACCCCTCAGCAGACTTTGAACTCCTCTGTTTACGATTCTCCTGATCGCTGCACATAAAACAAATCAAAGGTATTGAACCAGCTGTAAAATGGATTATAAAAATCCCTCAAGGAAATCTATGGCTCAATAAAGggggTTATATACTGGATTAACCAGCGGCCAAGTATTGTTCAAAGCTGAGTATTTCTATGTCTTAAAACATGTCTTGAAGGTATCTTACATCTTGATTCTGTTCTCACTTTTGTAAAATACCCAAAGCATAACTAGAACAGCCTTTAGTCActtaaaatatgaatatgaataatttatgtatttttgtcaCAGAGGCAGAACAACCTGGTCATGTATTTATCCTGAGTTGGAGTGACTACTTCTGTGCAGCACCTTATGTTTCCTGGTTGACACTGATAATCTCTAATGTAAATTAAGTTGTTCTTGCTTTGCCCAATCTCATCAGGTTTAacatgtagagagagagagagaaaaaacaaccTCAACAGGACAGTGGTTTTGCTGACAGAGCAGCCTAGTACATGGATAATATAACATAATGCTCCTCTCATATCTGTTGCATAATAGTTTGTACTTTCTCTCAGGGCTCAGGGTAAACGACTGTGTGATACTGTTCTTCTGCGTTTGTACAGCCTTCCATTATTGATTATGTACTCACCATGTGCTCAGCTGCAGCAGGGCCAGTCAGACTAATCCCCTTAATAACAGAGGCAGAAATACTTGACTTGAAACAAAGGCCCTGGGCTGAGCAAGGGGCATCCGCCTCCCGTCAGGCACTGAGGTTACAGCACCCTGTTGAGGAACAAAACGTTTTGAAGTCAATAACTCGTGCTACAGGAAGCAGTGGTCAAGCAGCCGTGAATGCAGTGTTGACCATAGAGCTGTTGGAGTGAACACActagcacacacacatctgagcAGGTGCAGGTCACCCTATCCCACTTCTTTAATTATGCACATGAAGAAGGCCCCCGTCTGAGGTTTGGGTCCAGGTGATGCTGCTCCTTGCTCAGACTGTTCATTGGCTGCTCCAGACATTCATCCACTGTCAGCTTGTTGGTAATTCCACAGTTTCCGGACCATATTAAAGAGGAGCTTCTGTTGCTTTGAAAGTCCGGACTGTGAATGAACAGCGCCAACATGGAAAACAGCAAGCAGCCAGTGAAGGAGGTGCTCCCCCTGCCTCGCCTCCCTTCTCCACTTCCTGTGACCTCTTCCTCTCTGACCTCTGCTGCCACTTCAAAGAAACACACCACAGGATCCATGCAGAATGTACAGGTGGCCTCCTCAGTGGTGACATCGTTCAGCCATCTGAAGCCTCCAGAGAGAGATCTCACCCTGATGTCCCACATGAAGTCTATTAAGTCTCTGAGGCACGCTGGCTTCACTGCAGTCTTCACAGGACAAACTAAGCTTGACTGTGAGGATCTGTTGGAGGAGGCACCAATCGTCGATGTGATCCTGGCTGACGTCGACTCCCTGGTGCCCACTCACGATGAAGCCGGCAGCCCTATAGCGGAGTGGAAACGACAGGTGATGGTGCGGCAGCTGCAGCTCAGGCTGCAGGATGAGGAGGAACAGAGGAGACAGGACATAAGTAATGGCTACACGTCAATGGATGCTGGCTGGAAGTTCTCCCAAGCCTACAATGCAGTCTTGGGGCCCTTTGGTGAGCTTTTAACAGAGGATGACCTGGTGTACCTGCAGCAGCAGATCGAGACTGTTTCCCTGCAGAAGCGCTGCCAGGCCTATGAGCTGGAGCTGACCAGGCTGACCCAGGAGCTGAGGGCAATTTTACCTGATCCAATCGTAAACATCTCCCTCAACAAAGAGGTCCTGCAAAAGATGGACGCAGAGGGGAAAATGTACCTGACATTGCCAGCATGGTGCAGTCGTGTTTCAGAGATTGTTAAGAGCATGTCAATGCTGGTGGCTAATCTGACACAAACCACAGAAGAAGGGGGTGAGAGGGGGATAGTGGAAGGCATGATGGAGGAGATGAAGGGTTCGCAGGGGGTAAGAGATAGTTTAGGAATTGATTTAGGCCAGGGATTGGTGCAACAGGGCCAAGTGAAGGTGTCAGCAGATGGTGAGACCTCTAGTGTGTGTAGGATTCCTCATATAGGGATGGCGTCAGCTTTTAGCCATCGTCTGGAGACCAACAGCTACGGCAGAGCCAGGAGGGAGAGGGTGGAGAGGGAGATCCAACAGTCTGGGGTGTCGGTCAGAAACCTCAGATCCAACTTTGAAGGTCAGATTGGTAGTATTTATCCCTTTGCTGGGGTTATGATAAGAGGCCAGGGTTTGAACAGCCAGGTAGGGTTTGGAGCTTCAGGAGTAAACAACCAGAATGCCAACACAGGCCTCAGCTGCAAGGTCAGTCACTGTGATCTTCCTAAAAAACGTATACCTGTGATGGAGACTACCAGCTTAAGGAAGGAACGTATCGTGGTGCTGTTCCTGAGCCACTGGAAAAAATCAGCATATTCTATTTCAGTGAGAGCAGCTAGGCAGAGACAGGGACAGGAAGCACTGTCAGAGGATGTGACAGGAGCGTCGCCCCAACAGAAAATCACCTCCATGTTTAAATTCTGCCTACAACGAGGTGTAGTGGCCAAGATGCTAAACTCCTGGAAGAATAAACTAGAACTCAAAGATGCACAAAAGTCCTGTTTGTCCTCCTCCAACTCCTCACAAAATCCACCACCTCGAGTAACCTTCTCCCCAGAGCAATTCCTACCAGATGTGGATGGCGTTGCAGTGACCCACGACAGCTTGACCCTTGACCTCTTCATGCTGGGATACTTCCACATCTTAGAGCAAGAGCTGTCACCTGAGGAGAGAAAAATGAGGCATCTACTCTGCTTCGAAGTCTTTGACCACGTTGGCATTTTCTCCTGGGAGACGGTGAGGGGCTTCCACAAGGCTGTTCTCCAGGAAATCCAGGCTGGGAGTCGACAGTGGAGCGACGGCTTCGAGGACATCAAAATTCGCTTCTTTGGGGACTCGAGACCATGCCGCTGtccatcaccatcatcatctttATTGTTGTCAGATTCCAGACTTGTACCCAAAGTTGTAGTTCAATCTGCTACTCCAGCCGAGTGTTGCAGAGACACAGACTTCTCTTGTTTCAACAAAGAAGACATTTGTGAATATATCGACCGCAGCTTTGCTTTCTGGAAGGAGAAAGAGGCAGAGCTCTTTGATTTTAAACATTAGTATTAAGgttaagtttgacattttttgcacACACGGTGACATGTcggtgtgtttatttttgtttaactgACGGGGGCTGAATAAAATTCTGTTGAGAAGAcattattgatgcattattaTTGCAAACTTAAGTCATAGTTATAGTTGTTAGTCAGTTAGTTGTTTACATAGTAATCACTGAAAAACAGAGGCCTTAAGTTGTGCATTTACTTTTCCTTTATATCCATTTTCTGCAAACACAAAATTATCCTTTCCATTTAAAAAGCGTTATGGTGTCATTTCTGTAATCGGACAGCAGGACCACAGaaaacattgtatacatttcaaTGAATGTGACAATATCTCTGAGGATTCCTATTATTTTTTAGTACTCTATCGCCACTTCAAGGGGCACTCCAATCATTTTACATGTCAAGGCCAATTTGCATCTTATATCTAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158350 lncRNA upstream 30290 24169668 ~ 24169953 (+) True G117488
TU158349 lncRNA upstream 30688 24164854 ~ 24169555 (+) True G117487
TU158338 lncRNA upstream 49472 24150458 ~ 24150771 (+) True G117476
TU158223 lncRNA upstream 124928 24073887 ~ 24075315 (+) True G117389
TU158250 lncRNA upstream 155759 24043969 ~ 24044484 (+) True G117406
TU158403 lncRNA downstream 48102 24257554 ~ 24258831 (+) True G117523
XR_005640665.1 lncRNA downstream 128241 24337693 ~ 24339256 (+) True LOC120568139
TU158431 lncRNA downstream 346967 24556419 ~ 24556657 (+) True G117547
TU158430 lncRNA downstream 360126 24569578 ~ 24576002 (+) False LOC120568789
TU158539 lncRNA downstream 628504 24837956 ~ 24838229 (+) True G117632
XM_039816226.1 mRNA upstream 2592 24171045 ~ 24197651 (+) True kif1ab
XM_039816710.1 mRNA upstream 39904 24152160 ~ 24160339 (+) True bokb
XM_039815960.1 mRNA upstream 58146 24138155 ~ 24142097 (+) False cdc20
XM_039815959.1 mRNA upstream 58146 24138166 ~ 24142097 (+) True cdc20
XM_039815961.1 mRNA upstream 58146 24138166 ~ 24142097 (+) False cdc20
XM_039816817.1 mRNA downstream 98 24209550 ~ 24216455 (+) True rab6bb
XM_039816819.1 mRNA downstream 98 24209550 ~ 24216455 (+) False rab6bb
XM_039817014.1 mRNA downstream 10785 24220237 ~ 24223598 (+) True aire
XM_039817016.1 mRNA downstream 10785 24220237 ~ 24223598 (+) False aire
XM_039817019.1 mRNA downstream 10785 24220237 ~ 24223598 (+) False aire
XR_005640839.1 other upstream 145539 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 145539 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 176584 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 285745 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 291842 23905870 ~ 23908401 (+) True G117353
TU158470 other downstream 458441 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 464472 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 741116 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1545641 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1566439 25775891 ~ 25793954 (+) False LOC120568895

Expression Profile