RNA id: XM_039816819.1


Basic Information

Item Value
RNA id XM_039816819.1
length 1755
RNA type mRNA
GC content 0.43
exon number 8
gene id rab6bb
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24209550 ~ 24216455 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGGATGCTGAGCTGCATTCCCATCATTctgtgaggagaggaggatCCCCCTGCGCACCCACAACGGAGGAGACATCGAGCGATAAGAACATATAAAAATAATCCAAGTTGAGCTCTTTATCTGCTACCATGTCAGCTGGAGGAGATTTGGGGAACCCCCTGAGGAAATTTAAACTCGTATTTTTGGGAGAGCAGAGCGTGGGGAAAACATCTCTCATCACTAGATTCATGTACGACAGTTTCGACAACACGTATCAGGCAACCATTGGAATTGACTTTCTATCAAAGACAATGTACCTGGAAGACCGAACAGTAAGGCTGCAGCTGTGGGATACTGCTGGACAAGAGCGCTTCAGGAGTCTTATCCCCAGCTACATTCGAGACTCCACAGTGGCTGTGGTCGTCTATGACATTACAAATGTGAACTCATTCCAGCAGACCTGCAAATGGATTGATGATgtcaggacagagagaggaagtgatgtaattatcATGCTAGTCGGCAACAAAACAGATCTGGAAGAGAAGAGGCAAATCATGATTGAGGAAGGAGAGCAAAGAGCCAAAGAGCTGAACGTCATGTTCATTGAGACCAGTGCCAAGACAGGCTGCAATGTCAAACAGCTGTTTCGTCGGGTTGCAGCAGCCCTACCTGGCATGGAAAGCTTGGACGATGCAAATCCTGAAGGCATGATCGACATTAAGCTGGACAAACCGGCAGAGCCTACTGTCCCCGAGGGCGGGTGCTCATGTTAATGCAGAGCTGAAATCGGACAGCTCCTTTCACACCATAGGCTTGTTGTGTTGCTTACTACTGGTTAGCTTCCAGTTGACTTCTCTAATTGGATATAGGATGTGGGCCTTGTATCTGATTGGACAAATCAAATGTTATCTTTCAGTCTTGTTCAGTTGTAAAATATTGTATACTTTGTCAATATGTAAGTGACTGGaggagaaaagggaaaaaaaacaacaaccaaatgttgaaatgaaaaCGAACATAAAACAGTTTTGGAAAAATGAAACAGGAGAAAAAACGGGACAACCAACGGAATTCTTTTCGCtgttatgttttgtattttttatatataaaaagggAAAGCACCAAAAATGATGCCTAAACATAGAAGGAGAAAAAGTCGGGGGGTCGGCCATTTTTCTAGATGGCCGAACACGTTTGAATGTCTGCAGCACGCATGCACGTTGATCTGatctttgacctttgacctttggcCTGCCTTCCAGGGTCTCCGCACTCTGGTAGGAGGTTGACTATCTTAGAATGTTTTATAGCATCTCTCTATAGCATCTCATGACAAAATGTATCTCATTTGATATTCCCACAAGAGTCAACTTCCAGTAGGTTCACCTGACAGTAGCTGTGACAATGTGACACTCTATCTCTCTATAGGTTtaacttttataaaacaaactgtactgtggtttaaaaaaaaaaagaagtaataaaAAGACAACTTACTATCACAACTCACCCTAACCCTTCAACcactcctctccttctcctcctttcctcaaaccctctctcctcctcctttcccgTCCCTTCATCCCGGTAATACACATATAACGATCCACTGTAATGCACTGCACTgtatataataatgtaatatgtaTGTTGTGAACGTCCCTCTGTAGAAGTGGTCCTTGTTCACCAGTATGAATAATGTTATAATGTCTaatgataaataaattacagaTTAAAGGGCTTCACTCTCTTAACCATCAACATTTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158350 lncRNA upstream 39597 24169668 ~ 24169953 (+) True G117488
TU158349 lncRNA upstream 39995 24164854 ~ 24169555 (+) True G117487
TU158338 lncRNA upstream 58779 24150458 ~ 24150771 (+) True G117476
TU158223 lncRNA upstream 134235 24073887 ~ 24075315 (+) True G117389
TU158250 lncRNA upstream 165066 24043969 ~ 24044484 (+) True G117406
TU158403 lncRNA downstream 41099 24257554 ~ 24258831 (+) True G117523
XR_005640665.1 lncRNA downstream 121238 24337693 ~ 24339256 (+) True LOC120568139
TU158431 lncRNA downstream 339964 24556419 ~ 24556657 (+) True G117547
TU158430 lncRNA downstream 353123 24569578 ~ 24576002 (+) False LOC120568789
TU158539 lncRNA downstream 621501 24837956 ~ 24838229 (+) True G117632
XM_039816814.1 mRNA upstream 98 24200243 ~ 24209452 (+) False espnlb
XM_039817014.1 mRNA downstream 3782 24220237 ~ 24223598 (+) True aire
XM_039817016.1 mRNA downstream 3782 24220237 ~ 24223598 (+) False aire
XM_039817019.1 mRNA downstream 3782 24220237 ~ 24223598 (+) False aire
XM_039817020.1 mRNA downstream 3782 24220237 ~ 24223598 (+) False aire
XM_039817015.1 mRNA downstream 3782 24220237 ~ 24223598 (+) False aire
XR_005640839.1 other upstream 154846 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 154846 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 185891 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 295052 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 301149 23905870 ~ 23908401 (+) True G117353
TU158470 other downstream 451438 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 457469 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 734113 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1538638 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1559436 25775891 ~ 25793954 (+) False LOC120568895

Expression Profile