RNA id: XM_039816846.1


Basic Information

Item Value
RNA id XM_039816846.1
length 4648
RNA type mRNA
GC content 0.56
exon number 24
gene id camsap2b
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26440735 ~ 26479429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGACCTTCATCGTCCCTGCCATCAAGAGCTTCGATCACTACGACTTTACCAGGGCCAAGATCTCATGCAGCCTGACGTGGCTGGTGGCCAAGGCTTTCGGCTCGGGCAACAAGCTCTGAGCAGGTTGTGGGCACGAAGGCGAGGCTCTGAGCTACGATGAACTGGAGCCATAGCAACAATAACAAAGATGCAGTACCAGAAGAGCTGGCCGAGCCTTTGTACAAGGACCAGTACAACCAGGAGCACCTGAAGCCTCCGGTAGCCTGCCTGCTCCAGTCCGCAGAGCTCTACTGCCGGGCGGGAAGCCTGATCCTCCGCAGCGATGCTGTCAAACCTCTACTGGGACACAACGCTGTCATCCAGGCCCTGGCCCAGAAAGGCCTGTACGTCACTGACCAGGACCGACTGGTCACCGAGAGAGATCTGACCAGCACGCCCATACACATGAGTTCCCATCTGGCGCTCATAGATACCCTGATGATGGCCTATACTGTGGAGATGGTGAGCGTGGAGAGGGTGATGTCCTGCATCAACAGGTACTCCTCGGCTGAACCCCTACACGGTGACGGACACATCCAGGAGCTGCCTTATGACACCGAGGATGCAATCGCCACCTGGATCAACAAGGTGAATGAACACCTGAAGGACATTCTTGTCGAAGAGCAAAAGCTGAGAGATGCTTACTTCCAGGagtcaaacacaacaacacacaaaTTTCCTAGCAAATGGTACTGGAGATTAGTACCTGCTCGCTATAGGAGGGAGCATGCCCAGCAGAGGAGCCCTCCATCGCTCCCCCTGGTGGAGAACCTGCTGAAGGACAACACGGACGGCTGTGCCCTGACCGCCGTGCTGCACTTCTACTGCCCACAGGCCGTCAGACTGGAAGATATCTGCCTCAAGGAGACTATGTCTTTGGCTGACAGTCTGTACAACCTCCAGCTGGTGCAGGAGTTCTGCAGGAACAACCTCAACCACTGCTGCCATTTCAGCCTGGAGGACATGCTCTACGCACATGCATCCATAAAGAGTAACTACTTGGTATTTATGGCTGAGCTTTTCTGGTGGTTTGAAGTGGTTAAACCGTCATTTGTACAGCCCAGAGTCTTCAACCCTAACGCCTGTGAGCCTGTATCATCCTGTAGAAAAATGGCTCCTGTGTCCAGTCCAGTTCAACAGAGCTATGCAGACAGACCTGGCAGTCCAGAGTACATCCCTGCACAGGGTATAATGAAGAGGTCTACCTCCATGTCCTACGTGGATGGCTGTGTTGGGACATGGCCCAAAGAAAAACGCTCCTCCTCTCGGGGAATCTCCTTTGAGATTCCTCTGGACGGAGACCTGACTGTGCTGCCCTGTGAAGCTCCCTCCTTCAGCGGTATGACCCGCTCAGCCAGCAGTGACGGTCTTCAAAGTTTCAAAGTTCACTATGCATCCCGAGGGAGCATGAAGCGCCACCACTCCCTCATGCCCGTCGATGTCAACGGCCAGAGCAGACACATAcctgaggaggatgaggagttCACCTCCCTCAAACCCCTGGGGCGCAACAACACGTTCTCAGTCATGGACCAAAGCAGGTACTCCAATGGAGTCCTCCCGGACAGCAACCACATCCCCAACAATCACCATGGCAACCATAGTGGCCACATCAGCCCATCAACTCCTCCAAGCATTGAGGAGGCCCTGAAGATTATCCACGACACAGAAAGGCCCCATGCCAGCCTGGGTGTGGGGGACGGAGACAATGGCTTCTTTCTCCACGGCGCCGAGCCTTGGGGCCCTTCAGACCCTCCAGGGGCCCAGGGTCAAGGAGACGACCCGGACTCAGCTAAGGCTCGGCTGAACGACCACGACCTCAACTCTGTGTCCACTGATGAAGTTGACACAGGCATCCATGTGAGGACAGAGGACATCCAGAGCTTGGATGAGGACTCCTCCTCTCTGAGAGACTATTCAGATATAGACCCAGATTGTGAGGCCATGACCCGGTCGTGCCCTCTGCCCGACCAGCCGGACAGGGAGAAAAGCAGGGAAGGAGGACGGAAAGGGCTCGGTGATGCTGACGCCGACtatgagaggggagagagaggtgacAGGAGCAGCCCCTGTCCCAGTTCAGCACCCACAATCCCCAGGTCCTACACAGTCAGCCCCGTCTCATCCTCCGGAGGCTCTGGAGGCGGCATGGTCCGGATGACCAGCTTTGCAGAGCAGAAGTTCAGGAAGCTGGAGGGAAGGAGTAGTGGAGGAACCACGCCAGAGAGTTCAGATCTCAATGTGCCGTACACACACCTGCCAAGAAGCATTTCTTCTCAGaTGTCTACACCTCCTTTGCCAATCACATCTCCCTCTCCAGTAACGCCTTCCCCCAGAGACCCCTCCCACCTGATAGCCTCAGAGATGATTCAGCTGAGGATGAAGCTGGAGGAGAAACGGAGAGCCATCGAAGCCCAGAAGAAGAAGGTGGAAGCAGCTTTCACCCGCCATCGTCAGAGGATGGGCAGAACAGCCTTTCTGAATGTAGTGAGAAGAAAAGGAATCACGGCCCCTCTCAGCCCCAGCTCAGGGGAAGCAGAGACGCCTTCTCCAGAGCCACTCACAGCCTCAAAGGAAAGCAGCCAGGCCAGCATGGAGCGGGCCGAGAGATGCAAGCCAGACGGAGCAGCTCCGAAATCCCCCTGTGAGGACGGTGGAGGTGTGGCTCCGGGAGAAATCGACCTTACAGAATACACACGCTCCATTGAGAGGCTGAACACGTCGCTGGGCTTCCTGCAGACAGAGATGCAGCGTTTGTCCCAGCAGCAGGAGACCATCATGTCCATGAGAGAGCAACAGCAACGAGCCTGGGTcattcctcctcctgctccatcTCCACACAGGCAGCTCCGAGAGTTGCGTAGCAGCAGTGTAACAGGTCGGGGATCAGGCCGAGGCTCTGTTGGCTCTTTGTCTCCCATCCTTTCTTCTTCCGGCTCTCCCCGCGCTCCCAATCATTCCCCTGCTGGCCTTAAGCGCCGGCCGGCCTCCTTCCATGCCAGGACACCTAGGACGCCCCGACCAAATGATCTGAAAGTCACACCCTTCAGTCGAATGCTCAACACCCCCACCTCTGTGGACAGCCTACCCAGACTGAGGCGTTTCACCCCCAGCCAACCCCAGGTCAGCGCGTTTGCTTACCTGGGCCACGATGAGGGGCCTCGGGAAAGCGAGAACCAAGAGGCCAAAGacaacagagaaaacactgaGGACAAAGATGAAGCTATGGTAAAGAAGAGTGCTGGCACTCCTCAGCCATCTACTACAGAAGCAGCCAAAGAGAAGGAAGATGAGCGACAGGAGGGAAGAAAACAGGCAGAGCGAGCTCATTCCAAGGGTGGAGTCAAGCAAACCAGGTCATCGGAGGTGTTGTGTCAACCGGTGTCTGAGATCCAAGGGCCCACAGGCAGCCGGGTAAAGGGAGACGCCCAGGACAGAAGAGACTTGGTGGAGGTGCCTCTGTCTGGACCGAAACCTCCTGGACGACCACCGCACCGTCAGGAGATGACGGGAGGGACAGAGGCCGGAGAAGACCAAAAGATCTGCTGTGGATTCTTCTTCAAGGATGATGTGAAAGGGGAAGAGGACATGGCAGCAAAGAAAGCAGCTCTGCTGGACAAGAGGctgaggagggagaaggagacgCAGGAGAAGAAGCAACAGCAGGAGCTGGACCAGGAGCAGAAGAAGGAAGCTGCACGGTTGAAGGCCGAGGAGGAGCAGCTGAAGAAGGACGACGAGAAGGCGAGGAGGGATTACATCAAGCATGAATATATGAGGAGGAAGCAGCTCAAGCTGATGGAAGACATGGACCAAGTCATCAAGCCTCGATCTGGAAGTCTCAAGAAGAAGCCCCGGCCCAAGTCCATCCACAGGGACGTCGTGGAGACTACGCCCCCCGTTAGAGCGACAGGGGTGCGTCCTCGAGGCTTCTCAGTATCAAGTGTTTCTTTGGCGTCTCTCAACCTGGCTGACAACGACAGAGATCAGCCAAATAACAGGAAGAACAACAGAGGCAATAAAGTCTCCCATATCCCGTTCTTTCTAAGCTCTCCCAAAGACAGAAAGGGAAGGCCAGACTCTGCAGAAGGTTTCTCTTCCTGTCCTTCGACTGGTAGTCGTAACGGAGAGAAGGATTGGGAAAATGACTCCACCACCTCATCCACTCCCTCCAACAATGAGTACACAGgACCCAAACTTTACAAGGAGCCCAGTGCCAAGTCCAACAAGCACATCATCCAGAACGCCCTGGCTCACTGCTGCCTGGCTGGCAAAGTCAACGAGGGGCAGAAGAACAAGATACTTGATgaaatggaGAAATCCGAAGCCAATAACTTCCTTGTGTTGTTCCGTGATGCCGGATGCCAGTTCAGGTCCGTGTACGCCTACTGCCCCGAGACGGAGGAGATCACCAAACTGGCCGGCATCGGGCCCAAGAGCATCACAACCAAGATGATCGAGGGCCTGTACAAGTACAACTCGGACAGGAAGCAGTTCAGCCAGATCCCAGCCAAAACCATGTCCGCCAGTGTGGACGCCATCACCATCGCCAGCCATCTGTGGCAAACCAAGAAGCAGGGGACGCCCAAAAAACTGCACACTAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159066 lncRNA upstream 126736 26314265 ~ 26314630 (+) True G118009
TU158990 lncRNA upstream 133732 26306689 ~ 26307634 (+) False ece2a
TU158986 lncRNA upstream 232495 26208356 ~ 26208871 (+) True G117938
TU158981 lncRNA upstream 236536 26204611 ~ 26204830 (+) True G117933
TU158959 lncRNA upstream 375527 26058254 ~ 26065839 (+) True G117917
TU159180 lncRNA downstream 54410 26532166 ~ 26601368 (+) False G118095
TU159181 lncRNA downstream 54410 26532166 ~ 26601409 (+) True G118095
TU159184 lncRNA downstream 70900 26548656 ~ 26605084 (+) True G118098
TU159201 lncRNA downstream 124900 26602656 ~ 26674451 (+) True G118115
TU159223 lncRNA downstream 184526 26662282 ~ 26664844 (+) True G118135
XM_039816755.1 mRNA upstream 1916 26435750 ~ 26439450 (+) True ticam1
XM_039816365.1 mRNA upstream 23375 26416544 ~ 26417991 (+) False ccl20a.3
XM_039815715.1 mRNA upstream 47581 26387680 ~ 26393785 (+) False LOC120568303
XM_039815714.1 mRNA upstream 47581 26387989 ~ 26393785 (+) True LOC120568303
XM_039815711.1 mRNA upstream 53844 26369787 ~ 26387522 (+) True chrng
XM_039816850.1 mRNA downstream 3020 26480776 ~ 26496809 (+) True wdr47a
XM_039816851.1 mRNA downstream 3020 26480776 ~ 26496809 (+) False wdr47a
XM_039816847.1 mRNA downstream 31172 26508928 ~ 26521103 (+) True LOC120569037
XM_039816848.1 mRNA downstream 31172 26508928 ~ 26521103 (+) False LOC120569037
XM_039816849.1 mRNA downstream 31172 26508928 ~ 26519297 (+) False LOC120569037
TU159113 other upstream 23358 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 39288 26395426 ~ 26402078 (+) True G118011
TU159071 other upstream 39288 26399420 ~ 26402078 (+) False G118011
TU158989 other upstream 224325 26215727 ~ 26217041 (+) True LOC120568800
TU158825 other upstream 610671 25830055 ~ 25830695 (+) True G117829
TU159178 other downstream 113074 26590830 ~ 26600072 (+) True prkab2
TU159241 other downstream 287736 26765492 ~ 26769911 (+) True G118149
TU159378 other downstream 405803 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 1124268 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1679217 28156973 ~ 28159589 (+) False LOC120568082

Expression Profile