RNA id: XM_039816853.1


Basic Information

Item Value
RNA id XM_039816853.1
length 2592
RNA type mRNA
GC content 0.53
exon number 16
gene id gpsm2
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26496871 ~ 26508800 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATACGGTAGTACAGCCACggcttttcttctttctcatcGAAGTTAAATCGAAGTTTTACAAAAAGTTAAAGGATAATGTAGCGTTTTGGGCTGCATATAACGTTAGTACAGTTTGTCCATATATAacagacgttttttttttaatcgaccTTATGTTTTTATTCTTGTGAAAAagtaaagagaagaagagaattcACCATTGTTCGAACTGGATCGCCAAACGCTTCCCAGATTTCCTGTTCCTGTGTGGAAGACTCACAGAGGGCCGCTGGCGAGATTGAGGTGCGGTGACGCAAAACACACAGTATACGAACGTAGCCGCGTGGACTGACGCTCCGGACTCTGCAGCTCTTTCTAACACTCATGGGGTTGCCTTCCCCTGTCAACACTCAGCAGAGGGACGCTCACACACTTAACCACGTTTCGTGACATTTTCTTTGGTTTACCTCCTCTTGCCCAACTCCCTTTGaccaaagaatttttttttatttttattttctttcttgttgGCTCTTGTTTTTAAACGCAACCATTTTTTCCGGAACAAGACTGGGATTTTCCCTCATATTATGCGCAGCAATGGATAccagtggctcagtggttagcacggGAACTGAGGAGCAGTCCTTTCATGTCCGCTACAGGATGGAGGTGTCCTGCCTGGAGCTGGCGTTGGAGGGTGAGCGGCTCTGTAAGGTGGGCGACTACAGAGCAGGCGTCTCCTTCTTTGAAGCTGCCATCCAGGTGGGCACAGAGGACCTGCAGGTGCTCAGTGCCATCTACAGTCAGCTGGGCAATGCCTACTTCCACCTGCATGACTACGCCAAGGCCCTAGAGTTCCACCGGCATGACCTCACCTTGACCAGGACAATCGGTGACCTGCTTGGAGAAGCCAAAGCCAGTGGAAACCTTGGCAACACATTAAAGGTGCTGGGGCGATTTGACGAGGCTGTGGTTTGCTGTCAGCGGCACTTGGACATAGCCAGAGACATTAATGACAAGGTGGGTCATGCGCGAGCTCTGTATAACTTTGGGAACGTGTACCACGCCAAAGGCAAAAGTATCTGTTGGAGTGGAGCTGAGCCTGGAGATTTCCCAGAGGAGGTCATGATGGCACTGAGGAAGGCAGCTGAGTACTATGAGGCAAACTTGGCGATAGTGAAGGAGCTTGGAGATCGTGCTGCTCAGGGTCGAACCTATGGTAACCTCGGCAACACCTACTACTTGTTGGGAAGCTTCCGCAAAGCGGTAGCTTCTCACGAACAGCGCTTGCTCATAGCTAAGGAGTTTGGCGACCGCTCGGCAGAAAGACGGGCTTACTGCAACCTGGGGAACGCCTATATCTTTCTGGGGGAATTCGAAATGGCTGCTGAACATTACAAGAGGACACTGCAGCTGGCCAGGCAGTTGAAGGATCGCGCTGTGGAGGCCCAGGCCTGCTACAGTCTGGGCAACACCTTCACCCTTCTGCAGGATTATGAGAGAGCCATAGACTACCACCTCAAACACCTCATCATAGCCCAGGACCTCAatgacagGATTGGGGAGGGTCGTGCATGCTGGAGTCTTGGAAATGCTTACACTGCACTGGGGAACCATGACCAAGCCATGCACTTTGCTGAGAAACACCTGGAGATCTGCAAAGAGACTGGAGACAGAAGCGGGGAGCTGACGGCTCGTATGAACGTGTCTGATCTCCAGACGGTTCTGGGTCTAAGTTACAGCACAAATAGCTCCACTATTTCAGAGAATACGGACATAGACTACAACCTGCACGGAGCGAGGCCCAGGATGAGCAGAAGACACAGCATGGAGAAGCTGGAGCTGATGAAACTCACTCCAGACAAGATAAATGGTCAGAAGTGGAACAGTGACATCCTGACCAAACAGTCTAAACCCTCGCTGGCTAAGAGCTCCTCCAAGCTGTTCTTTGTCAGCCGCCTGCGTGGGAAGAAGTACAAGGCTGGCGGCTCCAGTAAGGTCCTCCAGGACACCAGCAACACTCTGGACACCAGCCAGACGGCCACACAGGGACCACAGAAGCGACTCAGTCCTGACATGCTCGGAGACGAGGGCTTCTTTGACCTGCTGAGCCGTTTCCAGAGCAACCGTATGGATGACCAACGCTGTTCAATACAGGATAAGGGCAGCAGGTTATCATTAAGCAGTGGTCCAGAAACGCCGCCCAGAGCCATGAGGAAAACTGTATCCGAGTCCGCCAGCGTCTCTGGCGCCCCAGGCCGGCGGGCGGAGGAGTCGTCGGCAGCGGGGGGAAGCCTGCCCGGCCTCAGGCTCCATCAAAACAGCAACCAGGCCGTGCTCAGCCACCTGATGGCCAACGCTGACAGTGCCGAGCCCGACGACGACTTCTTCGATATGCTCGTCAAGTGCCAGGGGTCCCGTTTGGATGACCAGCGCTgtgcccctccccctcctccggTCCGGGGGCCCACTATACCAGACGAGGACTTCTTCAGCCTCATCATGCGCTCTCAGGCCAAACGAATAGACGAGCAACGTGTCACCCTGCCTTCTGCAGCAAATGCAACAGCCAGGCCTAGCTCCAGCTCCAGCTCAACTAAGCACTAA

Function

GO:

id name namespace
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005092 GDP-dissociation inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159153 lncRNA downstream 17825 26477463 ~ 26479678 (-) True G118076
TU159151 lncRNA downstream 22547 26473887 ~ 26474956 (-) True G118075
XR_005640834.1 lncRNA downstream 70705 26421455 ~ 26426798 (-) False LOC120569074
TU159131 lncRNA downstream 71634 26421450 ~ 26425869 (-) False LOC120569074
TU159275 lncRNA upstream 23367 26532167 ~ 26601385 (-) True G118165
TU159297 lncRNA upstream 152821 26661621 ~ 26665181 (-) False G118175
TU159313 lncRNA upstream 223077 26731877 ~ 26732084 (-) True G118186
TU159466 lncRNA upstream 451600 26960400 ~ 26963105 (-) False G118308
TU159467 lncRNA upstream 451600 26960400 ~ 26963752 (-) True G118308
XM_039816744.1 mRNA downstream 85400 26411167 ~ 26412103 (-) True ccl20a.4
XM_039815713.1 mRNA downstream 87095 26402976 ~ 26410408 (-) False capn10
XM_039815712.1 mRNA downstream 87096 26400982 ~ 26410407 (-) True capn10
XM_039815716.1 mRNA downstream 96619 26392889 ~ 26400884 (-) False eif4e2
XM_039816393.1 mRNA upstream 57190 26565990 ~ 26571804 (-) True prpf38b
XM_039816373.1 mRNA upstream 63597 26572397 ~ 26581219 (-) False LOC120568700
XM_039816372.1 mRNA upstream 63597 26572397 ~ 26581217 (-) True LOC120568700
XM_039815104.1 mRNA upstream 96061 26604861 ~ 26652958 (-) False LOC120567967
XM_039815103.1 mRNA upstream 96061 26604861 ~ 26630109 (-) False LOC120567967
TU158687 other downstream 1574185 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 1961007 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2476002 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2477065 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2628277 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 152821 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 311038 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1162176 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1204667 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1208751 27717551 ~ 27718759 (-) True G118524

Expression Profile