RNA id: XM_039816863.1



Basic Information


Item Value
RNA id XM_039816863.1
length 915
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC120569047
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 388691 ~ 397504 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctatgtgtgtgtggttttaagTGTGTAGCTTTGAGTAATTGGGATGGATTGTGTGTTTGCTGACAGGTGATGCTGTCAGGATGTCTGACGGGAGGCAGCGAACATTGTCCACATCTGGAGAGTCTCTGTACCAGATCCTGGGTCTACAGAAAGGCTGTTGCCATGACGACATCAAGAAGTCCTACAGgAAGCTGGCGTTGCGGTTCCACCCCGATAAGAACCCTGATAACCCCGAGGCAGCGGAGAAGTTTAAGGAGCTGAACAGCGCCCACGCCGTTCTGTCGGACCTCACCAAGAGGAACATCTACGACTCGTACGGCTCTCTGGGGCTCTACGTGGCTCAGCAGTTCGGAGAGGACAACGTCAACGCATACTTCATGCTGTCCACCTGGTGGGCCAAGGGTCTGTTCTTTGTCTGCGGCGTGCTGACcggctgctactgctgctgctgtctctgctgctgctgtaactGCTGTTTTGGGAAGCTGAAGCCGACGCCgccgggggaggggggggggccggACTACGTCTCCCCCGACGACCTGGAGGAGGAGATACGCAACGACCCCGACGACGatGTTGAAACTCCGATCGTTCAGCAGCCGACGAACGCCAGCGAGAAAACTCAGCTGATCACCGACGGCCACCGCAGATACGGAGACACCTACAcatgaaacaggaaacaggaaacaggaaacaggaaacaggaaacagaaaaatGCGTATGAAATCAAAAGTGAATTGGAATTCATGTTGAAGCAACAGTCCTCATCTTCCTCTGATAAACACATAATAACTTTATCTTCTATATAAtgtagaaagacagacagacagacacaaagaaagacagacagacagagacagacagacacaggcacagacacagacagacagacggagacagacagacagaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149283 lncRNA downstream 16000 267135 ~ 372691 (-) True G110895
TU149285 lncRNA downstream 98528 289796 ~ 290163 (-) False adhfe1
TU149288 lncRNA downstream 123460 264405 ~ 265231 (-) False adhfe1
TU149273 lncRNA downstream 126243 258084 ~ 262448 (-) False adhfe1
TU149347 lncRNA upstream 102473 497544 ~ 543185 (-) True G110925
XR_005640620.1 lncRNA upstream 153264 548335 ~ 548652 (-) True LOC120567842
TU149394 lncRNA upstream 282747 677818 ~ 767571 (-) True G110946
TU149419 lncRNA upstream 360850 755921 ~ 796589 (-) False G110964
TU149420 lncRNA upstream 360850 755921 ~ 756638 (-) True G110964
XM_039816880.1 mRNA downstream 61312 326426 ~ 327379 (-) True LOC120569059
XM_039814761.1 mRNA downstream 78629 309109 ~ 310062 (-) True LOC120567752
XM_039816038.1 mRNA downstream 86549 258075 ~ 302142 (-) True adhfe1
XM_039814765.1 mRNA downstream 145592 236344 ~ 243099 (-) False LOC120567755
XM_039816023.1 mRNA downstream 243643 120850 ~ 145048 (-) True fastk
XM_039815874.1 mRNA upstream 3963 399034 ~ 417701 (-) False LOC120568379
XM_039815872.1 mRNA upstream 3963 399034 ~ 417701 (-) True LOC120568379
XM_039815873.1 mRNA upstream 3963 399034 ~ 417701 (-) False LOC120568379
XM_039815881.1 mRNA upstream 24830 419901 ~ 433183 (-) False LOC120568383
XM_039815880.1 mRNA upstream 24830 419901 ~ 433179 (-) False LOC120568383
TU149268 other downstream 6026 375712 ~ 382665 (-) True G110889
TU149269 other downstream 7075 375712 ~ 381616 (-) False G110889
TU149279 other downstream 100351 266959 ~ 288340 (-) False adhfe1
TU149280 other downstream 100351 266959 ~ 288340 (-) False adhfe1
TU149262 other downstream 145605 235257 ~ 243086 (-) False LOC120567755
TU149406 other upstream 359192 754263 ~ 766300 (-) True G110957
TU149470 other upstream 454111 849182 ~ 849492 (-) True G110988
TU149680 other upstream 610000 1005071 ~ 1005925 (-) True G111136
TU149674 other upstream 613823 1008894 ~ 1010100 (-) True G111134
TU149667 other upstream 617748 1012819 ~ 1021435 (-) False G111133

Expression Profile