RNA id: XM_039816872.1



Basic Information


Item Value
RNA id XM_039816872.1
length 3483
RNA type mRNA
GC content 0.48
exon number 5
gene id nr2f6a
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34243838 ~ 34253143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGGTTCGGTAACCAAGCGATGGCCATGGTGAGTGGGGGCTGGGGAGATCCCAATGGGGGCACCAACGGGCTGGGGGACAAGAGCTACctgaggggggaggaggaagacgGCTCTCCCCAGGCGGGAGGCAGCGACATGGAGGCCGGAGACGACGACAAGTCGTGCGTGGTGGACTGCGTGGTGTGCGGGGACAAGTCCAGCGGGAAACATTACGGCGTGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGAGGAGCGTCAGACGCAACCTCAGCTACACTTGCAGGTCAAACAGAGAGTGCCAGATTGACCAGCACCACAGGAACCAGTGCCAGTACTGTCGGCTGAAGAAGTGTTTCCGTGTTGGCATGCGCAAAGAAGCAGTTCAACGCGGACGTATCCCCCCTCAGCCGAGCCTCAGCCCCTCTATAACACCCATAGGTGGCGCGAGCGGCCTCGGAGGCGGCGACTtctataacaacaacaacaacaacggggGAAGTGGCGGGGGTCAGCCGGTGTCCGAGCTGATTTCCCAGCTGCTGCGAGCCGAACCGTACCCCAGCAGTCGGTTTGGACACCAGTACAACCAGCAGGCGGGCCCCGATAACGCCATGGGGATCGATAACATCTGTGAACTGGCTGCCAGGCTACTCTTCAGCACCGTGGAGTGGGCCAGAAGCATCCCCTATTTCCCTGAGCTGCCGGTGTCAGACCAGGTGGCCCTGCTGAGGCTGAGCTGGAGCGAGTTGTTCATCCTCAACGCGGCGCAGTCGGCGCTGCCGCTCCACATGGCTCCCCTGTTGGCCGCGGCCGGCTTCCACTCCTCGCCCATGTCTGCGGAGCGCGTGGTGTCCTTCATGGACCAGGTGAGGGTGTTTCAGGACCAGGTGGACAAGCTGACCCGGCTGCAGGTGGACTCTGCTGAGTACAGCTGCCTCAAGGCCATCGCGCTGTTCTCACCAGaTGCCTGTGGTCTAACAGACCCAGTCCACGTGGAGTCTCTGCAGGAGAAGGCTCAGGTGGCTCTGACAGAGTACGAGAGGATGCAGTACCCGAGTCAGCCTCAGCGCTTCGGGCGCCTGCTCCTGCGCCTCCCCGCCCTGCGTGCCGTTCCCGCCAGCCTCATCTCGCAGCTCTTTTTCATGCGCCTGGTAGGAAAGACACCCATCGAGACGCTGATCCGTGACATGCAGCTCTCCGGAAGCTCCATCAGCTGGCCGTATGTCCCGGGACAGTAGCCCCCTTTAGGGACGAGGTCTCCGTCCGGGATTTGTGACGACAAGGACCCACAGGAAACCTCCTGACTCATCACTATCCATCTGTGTGGTTGTCAAACTGCAGTGCCAGCTGGCCGTcatatgtactgtactgtaagcgCTCTATTTCCCCCTCATGAAACGAGCTCTCTGTCTCCACACGGGCCTCCAGTGGAGAGACGAGCCAGCGCCAGGCTGGATCTGTCTTGTTGCCAACCCAGTCGTTCTGGTGCCAGGTCTCAGGCCAGAGACCAGCTTTTCATGCTGGGATCCGATATGGCCACCACAGCCAGTCATGTCACCACCCACATGCCATAGTGACTAAAGACGCTGCAGTTTCATGTAGAGGGCAGCAGCACCCTGCTACAAATACATCCAGAGGACAAAACTGTCCCACGGCTGAAAGTCGGCAGAACAATTTCCCCCCCACACTGGGCTCATTTTCCACAGCTCACCATTTGTGATACGGTGACCTTTTTATCCACACAGCTGATAACATTACAATACGGTATCGTGATGAGAAAGGACCGAATGGAACAGCAGTGAACTCAATATAAGAGAAAGCAAAGGCCTCGTTGTTGAAGAGAAACTTTTGAATTCACCGCGCTCTCAGCTCGACGCTGAGGACGAGGCCAACGAGCTGATCAaatggaaaagagagaaaataaaggaaaaaatcACCAAAGTCTAACGCATCATCCTCCGAGATGGTTTCTAAATAGAATAATTAGTACACAAagcagagtgaaagagatgaACGGACTCTTGTGACTGCCTGACCATCAAAGTGAACAAtgcatttacattcattcaCTACACTGTTGCTGTAGTTGAAGATTTTtcaccgaaaaaaaaaaagccacagttaCAGTACACGAGTGGACTAATACCTCGCGAGACATCAGAATGCTTCAGTCTGATATTTCCAAAACACAAACCTCTGTAAATGTTGTTCACCAGAAACCGCCTTCTTTTTTGACAACTGCCTTGTTATTCATTATAAATTTGGGACacatatgaaatatgaaatggGCACCGCAAACATTCGTCTTGTATCTTTTTAAAAAGGATCCCCAAAGTGATTTTCACTTGTGTTTCGGATATGAGTTTTGACTGACTGAATAAGGAGAATTCAGCTATTAAACAACGTTTGGATCgagctttttattattattattattaagaaacAGCAGGCTGACATTAACTCGGGTTCTCGTTAAACAACTCAAGATTCAAGAATTAGTTATAGTTGGTGGTGAGAGAATTTATAACCAACACTACTAATTAAATACCAGTTTACGTCGATCAATTCTGTTTCTGGGGTTAATGATCCCTTTAAAGAAAAAACTGTATTGAAATGTATATATTGAGGCCAACTACGTCTTTTTGCAtgttcaaatgttgttttttggaTCTCTGCTAAGTGGAGACTGTTTAATTCTTTTACGTTATGTAATTCAAGGttcatttaaacattaaagtatTGCTTTCACTGTTAGCTTCTAGATGTTTTTTTCTATATGTATTTACATGAAAATACCTCTGTCATCTGTTTAGATGTCAAAACAGCAAGCTTATCTTCATGCCATTACAGCTGATATGACACAGAGATGCTCTTGAGTCAGTCTCTACTGTTGTGAATGATGTGAGACGATACTGTAAAGGATGGAAatctggtgggggggggggggaactgcACTTGGAGGACGTTCGATGCCAAAACATCTCGCTATCTGTTAAAAAGCAGACGGGCCCTGATTCTCTGGTCCACCAGGATTTACCTCACACTGGTATGTCAAAAGGGCGAGTTTACAAAATCACAAGTACAATATTTGAAAGAAAAGAACAAGGTCAACCCTAAATGCTGAAGTCTGTTGTATTTACTTTTCAAACGCAAAGTAGAAGGATGTAACTCTGCTTCTTGATCTACCGCAGGGCCTTGTTGAAAGTTGTTTGGATATTCTTCTTTTAGGCAACGGCTCAAACGACCGCATCAtcgagagaaaaaaacaaaaaaaacataaatatgatattaatgttTTCTTATCTTTGTGTTACTGAGTTCTTACGTTTTTAAAATGTCACGTGTATGGCAACATTATTAAAAGAATCAAAAGTTGACGGTGTGTCTTTTgttatgttttgtgttttttcaaaCTACTTGGAAAAAGTGTTGTAATTACATCTGTATGAAGAATGCCAAATAAACACTGCAACATGTAC

Function


GO: NA

KEGG:

id description
K08549 NR2F6, EAR2; nuclear receptor subfamily 2 group F member 6

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU161770 lncRNA upstream 71529 34167011 ~ 34172309 (+) True LOC120568953
TU161773 lncRNA upstream 85858 34153919 ~ 34157980 (+) True G120125
TU161767 lncRNA upstream 97392 34144426 ~ 34146446 (+) True G120120
TU161700 lncRNA upstream 132491 34042552 ~ 34111347 (+) True G120064
TU161705 lncRNA upstream 230955 34012678 ~ 34012883 (+) True G120069
TU161872 lncRNA downstream 59646 34312789 ~ 34313388 (+) True G120199
XR_005640799.1 lncRNA downstream 96137 34349280 ~ 34377895 (+) True LOC120568876
TU161878 lncRNA downstream 96148 34349291 ~ 34377888 (+) False LOC120568876
TU161918 lncRNA downstream 180696 34433839 ~ 34435395 (+) True G120237
TU161949 lncRNA downstream 219706 34472849 ~ 34492377 (+) True LOC120567793
XM_039816715.1 mRNA upstream 73919 34166976 ~ 34169919 (+) False LOC120568953
XM_039816714.1 mRNA upstream 77986 34164080 ~ 34165852 (+) True mrpl34
XM_039816302.1 mRNA upstream 236587 34004895 ~ 34007251 (+) True ptger4c
XM_039816185.1 mRNA upstream 286449 33955166 ~ 33957389 (+) False LOC120568585
XM_039816181.1 mRNA upstream 305060 33929067 ~ 33938778 (+) True dmbx1a
XM_039816045.1 mRNA downstream 147605 34400748 ~ 34404001 (+) True rps28
XM_039815192.1 mRNA downstream 172156 34425299 ~ 34432504 (+) True angptl4
XM_039816593.1 mRNA downstream 277412 34530555 ~ 34565481 (+) False mast3a
XM_039816594.1 mRNA downstream 282946 34536089 ~ 34565654 (+) True mast3a
XM_039816592.1 mRNA downstream 283316 34536459 ~ 34565654 (+) False mast3a
TU161769 other upstream 77992 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 286334 33955183 ~ 33957504 (+) True LOC120568585
TU161565 other upstream 383991 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 841516 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 935974 33304822 ~ 33307864 (+) True G119769
TU161873 other downstream 64005 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 147658 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 200579 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 518931 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 519007 34772150 ~ 34772221 (+) True trnam-cau_25

Expression Profile


XM_039816872.1 Expression in all Baseline Samples

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XM_039816872.1 Expression in each Bioproject

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XM_039816872.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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