RNA id: XM_039816887.1


Basic Information

Item Value
RNA id XM_039816887.1
length 7108
RNA type mRNA
GC content 0.43
exon number 27
gene id LOC120569062
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17492287 ~ 17542090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacaccccagctTCCTTCCTGTGTTTATGTCATGGGCTTAATGACACTGTGAATCCCATGGAAGGAGGATGTCcttctccctgtctctgtcAGATCCCCTTGATTATTTACTATCTGACTTATAGAAACACAAGCTATATGACTACTATATATTGAAACAGAAATCACAATTTAGCATTACACGCCACAAATAACTCAGATTATAGTCACCTGTCAAAACCTGTTTATAATCCACATGGAATTTCAGCTGAGAGTGGGAGACTGTGAGGGAAAAGGATTactctgcaacacacacacacacactttttcatAGAATAAATAGAGATACACTGTATGTGAAAGATATAATAAGTGCTGAAACTTTAGTCTGTTCACTGGTTCATCAACCGACAAAACACGCCAGCTGATCACTTGAGTCATTTATCAAGAAAATTGTCAGTTGCTGGTTACATTTTcccaaatgtgaggatttactcattttatcttttttatattAGTACCATACATTTCCTGTTTTGGATTTATAGAGTTTATGGAGCaatcatttaaataataatctaCAGAGTAATTGACAATAAAAATAACcactagttgcagccctatgaATAAAATGAAACCAACACCCATAGCCTATAGCCATAGGCCTATGTGAATGTGAAATGATAGTATTGCTTTATATAAAGTTTAAAAACTATGTTAAAACTAGGCCTAGTATGCTAGTTTAACATGCACGTTAACCTTGAAATCAGGTTAACTTTtgaatgtagcctatataaaaggTGAAAATAACCTGCGTTCACCTTTCTAAAAAACAGAAGTTTGACAGAGACAGGGTTTTGCAGGACTTGTTCCAGTCGCTACATCCCGCAGGTGTAGGCTATAGCTACATTGTTGGCAACTCATTTCCGAAATATCAGCATAACGATTACTGTACGACCACCTCTGTGTGAAAACATCACAGCAGAAGGAAGGGAAGTTCACATACAAGCAGTGGAGGTTTGACGGCAGCCCACCCTCTTAAACTGCAGCAgctctctctgtcctccagaGGCGATGCTGGAGTTTGGAGAGACGAGGGGACGGTGCTGAGCGCAGCTACTGTGTCATGCCGCGCATAGGCTTACAATAGGGACAAAGTTTCGACATTTGGCATTAaccttctgtttctgttttcacCACTCTCCGACAACATGGAGTACTGGAGGCAGTGTGCGATGTGGCTGATCAGCTGCAAAGTGCTGCCCCCGAACCACCGGGTAACTGCGGACACGACGCAGGTGTTCGACCTGGCGCAAACCCTGCGGGACGGGGTGCTGCTGTGCCAGCTGCTTAACAACTTGAGACCTCACACTATTAACCTGAAGGAGATCAACCTCAGGCCACAGATGTCACAGTTCCTGTGCTTAAAGAACATCCGCACATTCCTGACGTCTTGCTGTGAGGTGTTTGGGATGAAGAAAAGTGACTTATTTGAAGCCTTCGATCTCTTCGATGTTCGAGACTTTGGAAAGgTTATGGACACTCTGTCCAAGCTCTCCTACACAGCAGTTGCACAGCAAAGTGGATTCAAGCCATTTCCAACAGAGGAGAGTCTACAAGACGAGGACATTTACAATAATCTGGAAGACTTGATTGATGAGAATGCCATCGAGGATGAGGACGACTTGTATGCAGCGGTCTACGGGCTGGAAGAAGACTACGCAGGTGGAGAGATCTATGAAGACCTAATGAGGACTGAGCAGCAACCCCCATTGAAGCAGGCAGAGGTGGATGTCCGTAGCTGCTGCCTCACAGAGATCAAACAGACCGAGGAGAAATACACAGAGACCCTGGAGTCTATCGAGAAGtatTTCCTGAATCCTCTGAGGAAGTTTTTCTCTGCAGCAGAAATTGACAAAGTTTTTGTCAACATTCCAGACCTGGTTAAAGTTCACAAGAGCCTGATGGTCGATGTGCAGGACTCCATCTTaaacaaaaatgccttaaatctCTACCAGATTTTTATCAGCTACAAAGAGAGACTGCTCATATATGGGCTATACTGCAGTCGGGTGGAGATCGCCATTGCTGTTTTAGATCTCATTTGCAAAGAGAAAGAGGATGTTCGCTTAAAGCTGGAGGAGTGCTCAAAGAGAGCCAACAATGGGAAGTTTACACTGAGGGACTTGCTGGTTGTCCCAATGCAGAGAGTCCTCAAGTACCATCTACTTCTACAGGAACTAGTCAAACACACTCCCGATGCTGCTGACAAGAGCAACTTGAAGATTGCTCTTGATGCCATGAAAGACCTGGCTCAGTTTGTCAACGAGGTGAAGAGAGATAATGAGACAATAAGGGAGATCGACCAGTACCAGAGGTCTATTGAAAACCTGaatcagaatctaaTCAGCTATGGTCGACCAAAAGGTGACGGTGAAGTGCGTATGATCTCCAGTGTTGACAAGAGGAAACAGGACAGACACATCTTTCTATTTGATGTGGCTGTCATTGTTTGTAAGAGAAGAGGAGACAACTATGAGATGAAGGACATACTCGATCTCAACTACTTCAAGATCACAAACAACCCCACCACGGACAGAGAGGGTAAAAAGTGGTGCTATGGATTCTATGTGACTCACCAGCAGGGGCACACAGGCTTTGAATTTTTCTTTAAGACCAGAGAGCTGAAGAAGAAGTGGCTGGATCAGTTTGAAATGGCCATATCAAATATTCGACCAGAGAAAGCCAACCACAACAGCCACCAGTTCAAGCTGCACACATTTGAAAGGATCACTTCCTGTGCTTTCTGTCACCTCTTGCTCAGGGGCATCTTTAACCAGGGTTATCTCTGTCTTAAATGTGGGCTGGGGGCTCATAAGGAGTGTCTTGGTCGACTGGGAATCTGTGGGAGAACAGATTCTGCCAAGCCGAAGCCTAAGGAAAGCACAACACCACCAGACCCAGGTTTACCCAGGATGGTTGTGATCAGAGACTACAGTGGCATCCCCTGTCCCCAGTGTGGCCCCCCCCTAAGCATTCATGCGGGTGATGTCATTGAACTGATGTTTGCCGATCTGCACAGCTCTTGGTGGCAGGGGAAAATTCTGGCAACAAGCAAGATTGGCTTCTTTCCAAGTGACGCTGTGAGGCCTTGCCCATGTGTTCCAAAACCTGTCGATTACTCTGCCCAACTCTGGTTTGCAGGGCCTATGGAGAGACACCAGGCTGAGGTGGAGCTTCTGGACCGAGGAAGCAGCACCTATCTGGTTCGACACAGGAGTAAAGAGTGCACTGAATATGCCATTAGCATAAAGTTCAATGATAAAGTCAAGCACATTAAGATTCTGACCAAGGATGGCTGCTTTTACATCGCTGAGAGTCGCCTTTTCAAGACTGTACTGGACTTGGTGGAATACTACAAGCAGCACTCTCTGAAGGAGGGTTTCAGCAGTCTTGACACCACTCTGCAGGTCCCCTATAGGGAACTGTCCAATGGAAACATGCCCAATGCCATTACCAAGGCTGGCAGTGTGTTTTCTCCCAGGGTGGTGGGTATTGCAGTGGCACGCTATGACTTCTGTTCCAGAGACACACGGGAGCTCTCCCTGCTGCAGGGAGACATTATCAAGATCTATACCAAGATGTCCAATGGGTGGTGGAAGGGAGAGGTCGATGGCAGGATGGGCTGGTTCCCCTCTACCTACGTGGAAGAGGAGGACTGAATTTCCGGGATGAATGACATCTATTCGACGTTTGTTCAAAGCTGACCACCTCCAGCGAGCGCCATGCTGCTCAGTCACTCTCTGTGCCCTGCAAGTAAGATCTCTTTGATAAAACCCAGAGTCTCGGACTAAAGAGGAAGTGGTGGTGCCCTCAAAAACCTTACCCTGCCCTCTGACAGACTCTCACACAGAGCAGATGTCAAATCACAGATTCCAGGAGTGTCACGCCATATCTCGCCTCTCTGCGGCCCTGTCTGCCCACGCGGCCCACTGGGAAGTTCATGTGCTGTACCCAGAtaactctccctcctcccttcctgCTCACCTTGTCTTATTATTGATGACTCCATTGGCTGGTGCGAGACTTGCCTTCACTGTCATCATGTTTCAATACCAGGAAGGCTCAGGCACCCAACTGGAACACAGATCCTGCTGACAGCGCACCGCCCAGGTACCGCACCAAATTGAAATGCAGGATCTTAGGGGCTTTGACTGTTGTTGTAACACTATTGCCCTCTTGACTATTCAGACTTTTGTGTTTAACTTTCTTGTccaagacttttattttttaacagttaAACCACTGGACTAATATAAACTATGTGATATTTAAATGCAATTGCTGAATTGTGATTTGATGCAGTTTGAAAAAAGGATGGAAAGATTTCAGTGCCACAGCGTGAAGGATTGATCTGTCATGCACATGTGGTGTGTTTGCCATCTTAATGACTATTAGTATTGTGGAGCCAAGGGTAATTTGGTCATATCATTACAGGACAGCTGCACGTCTGGGGACAAAGTGATAATTAATAATGTTGTCGTGGAAGGTGTTTAAATACACCAGTGATAAAGCTATGTCTTGAAGCTTGGATTTCTattctgttttaatttatttgttgtcaTTGTTTAGTTGAATAACTACCTCAACTTTAAGAAGTATCTTCATGAGACATTTGATTGAtgtcaaaatttaaaaagtagtttacttcaaattcagatcacgtgtgtgaatattttttacaagttCAAATTGTCacatacaagttcagatttttttgttctgcaagttctcacattgtattctacaagctctcaccttTTGCACCACATTTACCTTCATAGGAAACCTCCCTGCCCGTGTGCACATCAAGCGTGTAAAGAGAACAAATGCTCTGTGAAGAGAAAGTACTGACAGTTGCTGATTCTGACGACAGAGAGAATATTGGCGTCATTGGGCAAACATTCCACAATAccctttcagcatattgtaattcaagtggtctgagagaaaaataGACTTTCACCcttttggctctgttttcaggctttagaaaatctagcccGTGACTTGGCATGAATATGCATTTTTCCCAAATTATCGAATATAGTGAATCATCAAAAGGAAGaaggaacacacacataaataatatTTCATTTTGTTCCCATTCAATGGCactaaagggaaaaaagaaTGCCCAGTTCTTATGTTTGGCTTCATACACGTGAAATCATCAAatagacaaagaaaaagaattaCAAAGCCAAATAAGTTTTAAAAGGCCATGTGTGTGGGCTAGATTGTGTAATTGGAGGGATAGGTATTCACTACGAGCTACTTTTGATCATTCTCTGTTTCACAGATTTTGTGTTTACCTCAACTCTTTTTGGAGTGAAAATTAATGATTCAATGGTGATGTAACACCTGTTCACTGTAGTGCAAAGTAGCACAAGAACGTTGAGTGATGCTGTTTTTCTTCAAACGTTAACACCCCCCTAGCCATGTGTGTGACATCAATATTTAATAAAAGCATACTCTTTGAATTGTACCGTTGAAATTTGATAGGCTATTCTTCCCTCTTCAGACAAATGTGGGCTTTGTGGTTGCATCACAAATCATAGCTGTGTCTGACATAGTTATGGAGGCGCAGTGGAAAACTGGCAGTGCTCAAATTATGGCTaaacaaacagaacagaaaagagAGACACCAGAAAACAGTTGTGGAACGGGAACATGTAAGCTTAGCGAAGTTCTAAGTTTTCTATCTAAATTTGCATCACTGAAATTGAAAACAACCTCAAGCCCCTTTCACCAGGGGCAAGTTAACATTTGTTGCTTTATAAACACATTTCATGGCTCATTGGCATGTTTAAAAGAACGAAAAGTATTGACTGTATCCAAATAAGTTCTTTATTTACATACATGAATGTGGTAAATATACAAACAGGTTTGTATATTTACGTGTTTTGGGAGAGAATATCATGGTTTACACCATTGCTTCCAGCAATAATACTTTATTATGCTATTTTGTAATTGATaagttttggaaaagtttgTTGGAAAACCGCTTTGGATCCTTTGAACTTTTAGTATGCAGTTAGTTATTGTCAAATCATGTCTGTAACATATGCCTGTACTGGGTTTTGGCATATTTTTCTGCAGTGTTCTGATGCTCTCAACCTATTACGCTGAGCCTGTGTTTGTCAGTTGATGTGCTCTGTCTACGGTTTTATACACATTCATTTTGACAATGCATTTATACGCCACTTTCTCACAATATCAGTATTCTGGTAATGTAAACTCCCTCAGGCTTACTTTCCCCCTACTGCTCTGCAGTCTCTCTTATGACCAAACTCCGCAGAGGGAGAGCTCTGCTGCACTAACAGTAACCCTCCCGTCACAAAGAGGCAGAAAGAATGGCTCCCCTAATACTCTTCTGCTCCTTAATCTGCCTGTTCCTGTCTTAGCCAGATAGATAAAAGGCGACGACGGAGAAGTTGGACagcagccagagagagagagagaaatgggtGTACAAGGTTGCATGGAGTAGATAACGTGCAGGGAGAACGGGGATGGTGTTTAGGggaatgtgtgtgcatctgaGAGAGGGACaaaaggcagacagagagagcaaaGGAAGCCATGCATCATCTTCATCTGTCTGAATGATCTCCTTAACCCCCAGTCTTTGCCAGTCAGCCCCTCTGGATCTCTATATGGGGGTTAAACAGGGATTTAGCTAAAGCTGAAGCTGCCCTCAAATACGGAGAGCTCTCAGTTCCTCTCAAAAGGCCTCAACTCTCCAAAAGACTTTATCTGTAAGATTTATATTCAACTGCTGACTTGTGACCGTCAACCCCCTTACAAAATCATACAACTACAATACAGAGTTTTTCTGTATTCAGACAAGGTACATAAAACCTGCCATGCACGAGAAAAGAGGAATGTAGAAAAGTATGTCTTGTTGCAAAACTCAGAGAAGCTGTTGTAGCTGACATTTACTATGCAATGTCCACATGATGCAATAAAATTGGGATTTGACTTTATGAAGGGAGACTCAACCAAATACTACTTCTATGCTATTATCTataccaataataaaaaatcCTATTGATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640743.1 lncRNA downstream 135078 17356351 ~ 17357209 (-) True LOC120568661
TU155728 lncRNA downstream 189729 17302264 ~ 17302558 (-) True G115458
TU155705 lncRNA downstream 327592 17164369 ~ 17164695 (-) True G115435
TU155704 lncRNA downstream 351070 17137754 ~ 17141217 (-) False G115434
TU155703 lncRNA downstream 352769 17137754 ~ 17139518 (-) True G115434
TU155842 lncRNA upstream 6132 17548220 ~ 17552950 (-) True G115563
TU155848 lncRNA upstream 30809 17572897 ~ 17573129 (-) True G115568
TU155850 lncRNA upstream 31375 17573463 ~ 17574125 (-) True G115570
TU155864 lncRNA upstream 65368 17607456 ~ 17608257 (-) True G115577
TU155934 lncRNA upstream 423725 17965813 ~ 17967692 (-) True G115624
XM_039814936.1 mRNA downstream 193363 17297055 ~ 17298924 (-) True LOC120567855
XM_039816565.1 mRNA downstream 216498 17183162 ~ 17275789 (-) True LOC120568842
XM_039816998.1 mRNA downstream 315876 17165891 ~ 17176411 (-) True LOC120569119
XM_039814525.1 mRNA downstream 450824 17039804 ~ 17041463 (-) False ly97.3
XM_039814640.1 mRNA downstream 469894 17020735 ~ 17022393 (-) True LOC120567671
XM_039816892.1 mRNA upstream 13892 17555980 ~ 17564537 (-) False ndc1
XM_039816891.1 mRNA upstream 13892 17555980 ~ 17564537 (-) True ndc1
XM_039815474.1 mRNA upstream 22623 17564711 ~ 17567046 (-) True zgc:113691
XM_039815473.1 mRNA upstream 25264 17567352 ~ 17571388 (-) True yipf1
XM_039815472.1 mRNA upstream 33218 17575306 ~ 17579575 (-) True tmem59
TU155671 other downstream 383383 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 447225 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 450811 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 690023 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 852475 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 941068 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1174794 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 1302817 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 1389886 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1679703 19221791 ~ 19222726 (-) True G116084

Expression Profile