RNA id: XM_039816892.1


Basic Information

Item Value
RNA id XM_039816892.1
length 2907
RNA type mRNA
GC content 0.47
exon number 17
gene id ndc1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17555980 ~ 17564537 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCTCAGAGGTCCTTTGAATGCATGTGGCGCGATATGGGAAACAGTGGAAAATAGTTTGACAGCAGGAGAGCCGAAGAGATTGTTATTGCCTTTTGGCTCTCCATTGATCTAAACAACATGCTTTCTGCAGAGCAAAGTTGTTGGTTCGTCCGCAAGGTGATATTCTGGAGAGCTGTGGCCAGTATTGCTTGGGCTGTCCTGTTTTTGCCACCCATCACAGCCGTTTTTGTAATCATCAGCAGGTTCAGTCTGTTCCACCCCATCCAGGCGGTATCAGAATGCCTGTCCTTCTTAACGAGTGCAAGTGCCATCTTCTCCTTCATTCTGCTGTGTGGAGTGATCATCATGGTGGGGTTCCTGAACCTGGAGTATTATACAGTCATCCCAACTATTGCATGCTCAAAAATTGCCCTGTTGGGTCAGCTGCTCCACCCTCGTCAGTTTGTCAACTCCCTGGCCCACTGTATCATGGGAATAATCGTGGCTTGGTGTTGTGCCATCACCATTGGGGGCAGATATGAGACAATCGCCTACTCTTGCACACAGGGTGATGGTTCCCCTCAGATGTGCCTGAATGAGTCTCACCTCATCCTTCTGTTGGCTGGAGCCTTTGTTGGATTCTCTCACAGTCTGCTGGGTGTGATCTACAACTTGAACTATGTTTCTTTTCACACTGTTCAGCAATACAAATACCTTCGCTTTAAGGGATCCCTATCTTTGGTGCTGAAGTGTAGCGCCACTCAAGCACTTTACTCTGTCAGGAACTACATTGTTGTGTATTTCTTTTTGGGATACGTTCCAAAATCATGGATTTGTAAGACACTGAATCTTCATTTGAACAGCTCTGTCCACCCTCTTGACAGCATAGCTGGACTGCTGGACCTGTCCCTGCTCTACCACCTGTGGATCAGCGCCAGCTTCCTCCTCTTCACATGGCACATGACGCTGCTGCTCTTTAGGATCTTTGTCACTGAGGTGTACAGTTTTCCTGTGCAGTCATCGTTTACTGAGGATGCCCACCAGTGTCTTCCTAAGGTTCTGACTGACAAACAGCCAATGATATTAAAGTTTCTAGCTCTGCAGGACTTGGCTCTGCTGTCTCAACACTCCCCATCAAGACGCAGTGAGGTCTTCAGTCTGAGTCAGCCAGGTGGCCATCCCCATAACTGGAACGCCATCAGTAAGGAGTGTCTGTCTCTGCTGGCTGATCTGACTCAGAGACTCATAGCCTATCATGACACTGTAGCAACCAATGGCAGGGCCAAATCACTGTCTACTGGGAGTGAGAGGAAGACTTCATCGGAGTCATCAGTTACCTCGGGTACAGAAGATCTTATGAGCCCGAGGCCTACTTTACTGATGAGAACTCCAGCTTCGGTCTTTGCACGCTCCATGGTTGGCTGCTCACAGAGCCCTCTGACGGCACCATTCACTCCTGACCTGGACAGCCCCTTTGCTTCTCCCGCCCTGCGGCGTCTTACTGCTCCTATGGACCAATGCTCACCGTGGTTCGGCACAGTGCAGAGCCCACACATCATGAGGAGAGCCCCAAAACTCTGGTCCACCTCCACAGATTCACAGGTCAATGGCAGTCCCCTGGCTTCCCCTGCCTCAGTTCCCAGTCCCAAGCAGGAACCGTCCAAACCAAGTCTCCTGGCTCAGTTCCTCCAGAACAGAAAAGAACAGCTTCCAGAGGCCTCCAGTCAAGCTCTGTTTGCAGACAGCCAGGCTCACATCTGGGCTTTAGAAGGGCTGTCTTACCTTGTTCAATCCTCCTTCTCAGAAGACCAGTTTGGGGTTGTACAGACAGCATTACCCAGCATTCTCAGTTGCATGCTGGGCTTACAAGAGGCAGTAGATCGTCACTTCAAGCTGCCTCATGCCTCCAGTAAGCCAGTCAGGTCGGCCAGCAGCATGGGAGACTCTACTCACAAAACACTGCGCTTTGCTCTAAGGGCCACTCTCAAGACTTCCATCTACAGGATAACAACTACTTTTGGAAATCACTTAAATGCTGTTCAGATGTCTGCAGAGCACCGGAAACGATTGCAGCAGTTTCTGGAGTACAAGGaataacgtgtgtgtgtccgtgtgtccgtgtgtgtgtgtccgtgatAGTGCCTCCTTTTAATATTTATGTCTGCACTATGTCATGGCGGATTGTATTTGATAGGCTAGATCACATCCCCTACATGCATGAGGCATGGGCTTCCTGCCCAGCTGCCAGACTGAAACGGGTTGGAAGCCCGACTGTTGCCTCCTGTGTTTTGAGAGATGTAAAGTAGCTCACTGTATAAATAAGTAACTCATTCCAAATGATATGTTTCATTTTGTATTACAAGAAAATCATACAGAGTAATCCCTTTTGACTTTTGTTAATTGGGATGAGTTGTAAAGGGCTATTTGCGCTGCATTTGTGCTGAATTATGCAGATCCTTTTGGTTTCACATTTAATCAGCTGTCTTATGGAATTACTATATCAAAACGTTTTGCATTTGGTGTGAGATAACATGATATGTCAGAGTGATGAGAGAGAAGCTGTGTTCTCTTCAGTTTCACAGGTGTCTGAAATGTGTTCTGGAAATACTTTTTTCTAAACTGGTTTTGTTCTAAACACCAGCCTGGAGAACCAGTTTACTGTTGGCTGTGCAGTTCAGGTTCTCTAACTAGAAAATACACCATAGTCAGATTTACAGATCAGACACCTCTGTTTTTATGTGTTAACTATTTGTCAGTTTTGTGAGTTTTGTTCATGTGAAAGAAGGCTGCCTTTCATGTCAGATCaaggatggagatggagtggtGTGACaggtaacaagtgtgggcatcatTTTTTGATTGTCATTGCCAACAAGTATTGAATTTAAACTCAAGAGACctgttgaataaaaacattatgtGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155842 lncRNA downstream 3030 17548220 ~ 17552950 (-) True G115563
XR_005640743.1 lncRNA downstream 198771 17356351 ~ 17357209 (-) True LOC120568661
TU155728 lncRNA downstream 253422 17302264 ~ 17302558 (-) True G115458
TU155705 lncRNA downstream 391285 17164369 ~ 17164695 (-) True G115435
TU155704 lncRNA downstream 414763 17137754 ~ 17141217 (-) False G115434
TU155848 lncRNA upstream 8360 17572897 ~ 17573129 (-) True G115568
TU155850 lncRNA upstream 8926 17573463 ~ 17574125 (-) True G115570
TU155864 lncRNA upstream 42919 17607456 ~ 17608257 (-) True G115577
TU155934 lncRNA upstream 401276 17965813 ~ 17967692 (-) True G115624
TU155949 lncRNA upstream 488447 18052984 ~ 18058106 (-) True LOC120568693
XM_039816885.1 mRNA downstream 13890 17492287 ~ 17542090 (-) True LOC120569062
XM_039816886.1 mRNA downstream 13891 17492287 ~ 17542089 (-) False LOC120569062
XM_039816888.1 mRNA downstream 13892 17492287 ~ 17542088 (-) False LOC120569062
XM_039816887.1 mRNA downstream 13892 17492287 ~ 17542088 (-) False LOC120569062
XM_039814936.1 mRNA downstream 257056 17297055 ~ 17298924 (-) True LOC120567855
XM_039815474.1 mRNA upstream 174 17564711 ~ 17567046 (-) True zgc:113691
XM_039815473.1 mRNA upstream 2815 17567352 ~ 17571388 (-) True yipf1
XM_039815472.1 mRNA upstream 10769 17575306 ~ 17579575 (-) True tmem59
XM_039814559.1 mRNA upstream 19253 17583790 ~ 17591365 (-) True cdcp2
XM_039815773.1 mRNA upstream 435363 17999900 ~ 18019896 (-) False ranbp3b
TU155671 other downstream 447076 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 510918 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 514504 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 753716 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 916168 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 918619 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1152345 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 1280368 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 1367437 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1657254 19221791 ~ 19222726 (-) True G116084

Expression Profile