RNA id: XM_039816901.1


Basic Information

Item Value
RNA id XM_039816901.1
length 4914
RNA type mRNA
GC content 0.49
exon number 40
gene id hfm1
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33574164 ~ 33601451 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAAATGCTGGTCAAATGTAGTGGGGTCAAGCTCTCACCGAACAGCAGAGTTTTAATGTCTACGGAGTAAATGTATTCATTATCACTGcCAGATTTCCCCAACCAGGATCCATAGTGATTGACCGACATTGCCCTGCTTTGCAATCAAATGTGTGAGCACCTACATGATCTGATGAGATGGGAGACTCTGATGACTGCACCTTATCCCTGGACAATCTGTTTTTTGAGAAACCCGTTGTCCACAAAGTAAAGCCACTGCACCAGGAGGTCAGCCCATGGCAGCTGGAAGTGCCTCCATCTCTTTCTCAGGTTCCATCCACTCAGGATATGCAGAAGGAGGCAGAGTCTCTCTCCAccttatacaGTTTCTCACAGATACCCAAGAAATTCCTGCCTCCTTTTAAGGGATCAGCTGGCCTTAAGGTTTTACCATCAAAAAGCAACAGTCCTTACAGTTTTAACAATGATGAGAACATTTTTGAGGACACTCATAGTGGCAGCAATAGAAGATCTGATGTCTTTTGGGGAGGTGAAGGGTTCAGGGATGACTGCCAAAGTGGCAGAAGTGGAGATGAAACCTTGCAGGACTCTGGTCATGCAGCCATCAGCAGGAGGGGTTTGTCTCTGGACTGCAGCAAAAGCCCACCTCTACGGAGAAGCTTGTTCAAGGTTCAGGTGTTGAACAGTGGAGGTGACTTGTCAAACACAGATGACctcagaagcagcagcagcagcagccagacAACATCCAGACCTCAAACTTTTCTCAGTCCGGTTACCATGGCGACAGGGCCTCCTCCTCTTCAGCCGCCACGGGCGACAGTTAGCCAGGCAGCTCCTCCTTTCTCCCCCTTCCCACCCCCTCCTCTGGGCTCATCTGCAGCGAGTGGCCGACCCCCGCAGAAGGCGGCACATGCTGAGATGCAGGGCACAAAGAGAGCCTTCGTTCCGCCCATGACGCCGCAGCCGCTTCACATACAAGGATCCTCTGGGTCTGGAGTTTTGCGACCAGTTTCTGAAATCCCAGCAAAGTTCAGATCCATCTTCAAGGACTTCCCCTTTTTCAACTACGTTCAGTCCAAAGCACTTGATGATGTTCTTTACACGGGTAAGAACTTTGTGGCATGTGCTCCTACTGGGTCTGGTAAAACAGTGCTGTTTGAGCTGGCCATCATTCGTCTGTTGATGGAGACCCCAGAGCCCTGGAGAGACGTCAAAGCTGTCTACATGGCCCCTATCAAAGCTCTCTGCAGTCAATGCTTTGAGAGCTGGAAGAAGAAGTTTGGTCCCCTGGGGCTGAACTGTAAGGAGCTGACAGGCGACACAGAGATTGATGACTTCTTTGAGATTCAGGACTCCCACATCATCCTGACCACGCCTgaaaaaTGGGACAGCATGACCAGAAAATGGAAGGACAACTGTCTGCTGCAGCTAGTCAGGCTCTTTCTTATCGATGAGGTGCATGTGGTGAAGGATGCGACCCGTGGTGCCACGCTGGAAGTTGTGGTGAGCAGGATGAAGGCCGTACATGCCTACAGAACAGCACAGAATCCAGACACAGGCCTCTCTATGAGGTTTGTGGCTGTATCAGCCACCATACCCAACCCCTCTGATATAGCAGACTGGCTGTCTAACGAGAGTGGTCCAGCTACATATCTGGACTTTGACGAGAGCCACCGTCCAGTGAAGCTGAGGAAGGTGGTGCTGGGATTCCCCTGCAGCCCGAACCAAACAGAGTTCAAGTTTGACCTGTCTCTCAACTACAAGATGGCCAACATCATACAAACGTACTCTGACCAGAAGCCTGCATTAGTGTTTTGCTCTACAAGGAAAGGAGTCCAGCAGTCCGCTGCAGTTCTGGCCAAGGATGCTCGGTTCATTTTGAGCATCGAGCACAAGCAAAGGCTGATGAAATATGCAGGCGCTATTCTGGATTCAAAACTGAGAGATCTGGTGATGTTAGGAGTTGGTTACCACCATGCAGGAGTTGACTTGTCTGATAGGAAGTTGATAGAAGAGGCCTTCACTATGGGAGACCTGCCTGTCCTCTTTACCACCAGGACTCTGGCCATGGGGGTGAACCTGCCAGCTCATCTGGTGGTGATCAAGTCTACCATGCAGTATGTGTCAGGCTCCTGTGAGGAGTACAGCGAGGCTGACTTGCTGCAGATGATAGGCCGAGCCGGAAGACCACAATTTGACACATCAGCGACTGCAGTGATCATGACCAAGTTTCAAACCAAAGACAAGTACATGAATCTTATGAATGGGGCGGAAATCATTGAGAGCAGCTTACACAGTCACCTGGTGGAGCACCTGAATGCTGAGATTGTTCTCCAAACCATCAGTGATGTGAACATGGCTCTGGACTGGATACGCTCCACCCTCCTCTACATCAGAGCCCTCAAGAACCCCACACACTATGGTTTCTCTGCCAACTTAGACAGATATGGAATCGAAGCAAAATTGCAAGAACTGTGTCTGAAGAACCTCAACTCTCTGTCCTCCATTGGTCTGATCGACATGGATGAGGATATCAACATCAAACCAACAGAGGGCGGCAGGTTGATGGCTAGGTTCTGTGTAGCCTTTGACACCATGAAACAGTTCAGCAAAGTGGCTGGCACTGAGAACTTGTCTGACCTGATCGAGTTAATTTCGAAGAGCAGAGAGTTCAGCGACATTCAGTTGAGAGTGAACGAGAAGAGGCCCCTGAACACCTTGAACAGGGACAAGAACAGGACCACCATCAGGTTTCCCATTGAGGGAAAGATCAAAACCAGTGAGATGAAAGTGAACTGCTTGATTCAGGCTCAGTTGGGTACCATCCCAATTCAAGAGTTTGGACTTACACAGGACACAGGAAGGATCTTCAAGAATGGGATGCGGATCAGCAAATGCCTGTCAGAGTTTCTGAGTCACCGATCCAAGACTGGATTCTCTGCTGTGCTCAACTCCCTGATCCTGGCGAAGTGCTTCAGAGCCAGGCTTTGGGAAAACTCGTCCTATGTTTCCAAACAGCTGGAGAAGATAGGTCAGAGCCTGTCAACTGCAATGGTGAACGCTGGACTCACCACTTTCAGCAAAATAGAGAAAACCCACGCCAGAGAGCTTGAGCTGATTCTCAACAGACATCCACCATTTGGCAACCAAATTAGAGAATCTGTCATACACCTCCCGACGTATGAAGTTACTTTGGAGCAGCTCCCAAGGTATAGCTCTGCTACGGCGGAGATTGTGGTGAAGGTGAACCTTAAAAACCAAGCACAGCTGTTGTCCAGGAGAACAGCTCCAGACCACCACTACGTCTCTCTGATTATCGGGAACTCTGACAACACTGTGGTCTTCCTACAGAAACTCacggACTCTGTGCTGTTGAAGTGTGGCAGCTGGTCGAAGAAGATTGAGGTGGCACAGGCCTCAAAAGGAGAGGAGATCAGTGTCAATCTCATCAGCTCACAATATGTGGGCCTGGACATCCAACAGAAGTTCAATGTCTACTACTCTGGAGCCAGGAGGTATGGAACTGATAATCCACACAACAAAACGTATGATCCGACTGTACAGAGGCTGCAGACACTGAAACCACAGTCTACAGATCAGGATGCAACTCAGAGGGAGAATGCCACATCTGCTACAGACCAAGATTCAGGCAATAAAAGACAGTGCAACCACTTCTGCAAGAATAAGGATCTCTGTGGCCATGACTGCTGTAAAGTAGGTGTAATTGTGGCACGGAAGAGGTCAGCAAATCCAGAATCCAGTTTCTTTTCCTATTTGAAAGACCTGAGAACCAGGTGTGACACACTCGCGCAGACTCCTGTCAAACGACTCAAGATGAAAATGAGCATGGAGGAGTCAGTGTCTGTCAGCATGCAGGACTTTGCTTACAAACCTAAAGAGAGGCTACCTACTGTTTCCTGGTATGGAGGAAGTCAGTATGAAGGTTCAGTGAGACCTCGCTCTGAGACCGTGGATCTGACAGGAGAAGACAGCGTTCCAGACAAAGTTCCTCTGGCCGACGTTGACAGTGATTATGATGACTATGTGGAGGACGTGTACGGGATGATGGAGGAGCCTGTCCAAACACCTGGCGCGTCTCAGACTCACCCTCAAATGTGGATGAACCCAGGAACCGGTGTTGGTGTGAGTCAGAACCGTAAGCCGCTTCTAAACCAGATCAATACAACCTCTTACTCAAAGAGGTCTACTGCGGGGTCAAACCAGGGCGCTCGCTATGAAAACACTTCATCCTCACAAATCCCAACTGTCAGCTTTGACCTGGGAAATGAATGGGACGACTGGGGCGACTTTGACGACGAGAACTTGGTGCACGCCAGCGAGATGTCATCGGCCTCATGTCCAACTAATGCTAAAGTCCAGCAGTCTGTTTACTACAACATGCCAGGCTTTGCTGCTACATCTGCACCAGTACTCCTCGGTCACTCACAAGTCAAACCCTGTATAACCACTGCCAGAACACCACTGAGgtCGATGTCAGGACCCTCACTGACCCTCAGACCACAGAACAAAATCACACTAGACTGgaataaagAGAGACCAAGCATATTCAGTGAAGAGATCACAGTAAATACACCCGAAAATCTCCCAAAGCAGACTGTGACCCACGTGACCACACTTCCAAGAGGTTTTGGTTTCTTCTCAACAATGAGCTTCCCATCCAACACCAGCTCATCTGTCAACAGAAGCAGCAACTCCAAAGAAGAGGAAGCTTTCCTTGGGATATTTGATGGGATATTTTAGAAGTATTGCTTGTCTAACTGTGACATGAATATGTTGTTAACATAAAGTGTTTTCTTAATGTTTGTGTTCATATTTTGTTAACCAGTGAGCTTTACATGAAGAGTTATAGACTGTTTTGAAGTCATGTTATTGTATGTTTATATTGTAAA

Function

GO: NA

KEGG:

id description
K15271 HFM1, MER3; ATP-dependent DNA helicase HFM1/MER3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161502 lncRNA upstream 16977 33538172 ~ 33562071 (+) True G119901
TU161485 lncRNA upstream 63625 33514011 ~ 33515423 (+) False pkn2a
TU161341 lncRNA upstream 288468 33290330 ~ 33290580 (+) True G119767
TU161328 lncRNA upstream 309846 33268370 ~ 33269202 (+) True G119763
TU161305 lncRNA upstream 385849 33192587 ~ 33193199 (+) True G119744
TU161561 lncRNA downstream 209625 33811076 ~ 33851937 (+) True gng12a
XR_005640825.1 lncRNA downstream 259987 33861438 ~ 33866996 (+) True LOC120569016
XR_005640826.1 lncRNA downstream 265944 33867395 ~ 33870784 (+) True LOC120569017
TU161570 lncRNA downstream 266318 33867769 ~ 33868000 (+) True G119961
TU161572 lncRNA downstream 266935 33868386 ~ 33868686 (+) True G119963
XM_039816898.1 mRNA upstream 19140 33551633 ~ 33559908 (+) False LOC120569066
XM_039816907.1 mRNA downstream 612 33602063 ~ 33610603 (+) True cdc7
XM_039816908.1 mRNA downstream 613 33602064 ~ 33610603 (+) False cdc7
XM_039816909.1 mRNA downstream 20937 33622388 ~ 33643583 (+) True rpap2
XM_039816910.1 mRNA downstream 20937 33622388 ~ 33643583 (+) False rpap2
XM_039816651.1 mRNA downstream 56348 33657799 ~ 33661745 (+) True rpl5a
unassigned_transcript_564 other upstream 176726 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 271184 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 412948 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 531914 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 797577 32780988 ~ 32781471 (+) True G119585
TU161565 other downstream 257091 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 353732 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 562652 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 715697 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 799350 34400801 ~ 34404001 (+) False rps28

Expression Profile