RNA id: XM_039816909.1


Basic Information

Item Value
RNA id XM_039816909.1
length 2337
RNA type mRNA
GC content 0.53
exon number 12
gene id rpap2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33622388 ~ 33643583 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGGCTTGCCGTAGAATTAAATACGTcataggtcaaagttgaaaacGTAGAAAACGGAAACATAATGGAGACCGAGGAGAGAAGAAGGAGCCAAGGCTCCGATAAACCCTCTAAAAAAGGTGGGAAGCGCACCAAAGCACTGGCTGCTGAAGAAGAAGCAAGAAGGAGAGAGGTAGTGACGGAGATGCTAAGGGATAAATTGGAGCTGGAGAAAAGAGCCCTGAAAATAGTGGAGCGTCTCCTGGAGGACAGCGTGGCTGAAGACTTCCTGGTTGACTGCGCAAGGTTCATCACTCCTGCTTATTACAAAGATGCTTTAGAGGAGAGATCCATTGCCAAAATGTGTAGTTATCCTATATGTTCAAATAAACTGGGCAAGATTCCAACTCAAAAGTATAGAATTTCTACTAAGACCAATAAGGTGTACGACATCACAGAGCGCAAGTGTTTTTGTAGTAACTTCTGCTACAAAGCCTCCAAAGAGTTTGAGCTACAAATCCCAAATACACCTCTTTGGCTCAGGCAGCATGAGAGCCCTCCAGAAATTAAACTGATGAAGAAAAGAGACTGCGGGAGTTCTGGGGAGGAGCTTAAGCTGTTGGAGAGGCGTCTACAAGTGGACGACATTGAGGACCCCCTCGCCGCTCCACCCGAGGACCCTCCCAGCTCTCGGCGGGGTCCTGCCGCAGACGGCCTCAGCCCCAGTGAAAGCAGCGACGCTGAGCAGGAGCAGGACTTTGTCTCCAGCGTGGTTTCCCAGCGGCAGGGACCCAGGGTGCACTGGGGCGACCTGCCTAAACGTACAGACGGAGACAAGAAAGGGGATCGAGGGATGATGGAGAGGCGGAAGAAACagcggagggagggaggtgagGAGGAGATTGAGGGTCAGGCcgcagagagggagggggaaaagagagagggtgagaaTGGACGGGAGTCACTTTCTTGTAAAACTGACGCTGAAAAACGGTCGACTTCATCAAACGCAGACAGACCTCGTGGAGAGCCGGTGCCAGACCAGCCCAGTGTGGAGGAGACTACAGCTAAACTGAATGTGTGCAGTTTATCCGACTCAGTCAATCAAACTGCTCCCCCACCTGTCGACTCAACAGCCACACAAGCAGAACCCACACATCTAATCACTTTTCCTCTGTGTGAAGACTCAAACAGCTCAACAGAAAGAAAACCTCTCCCTTCTTCAACCCTAAACAAGACAAATCAGGACGGCCACGACACGGTATCGAGCAGCCTGCCAGGCCTCAACATCACCCAGGTGAGTGTGAGCAAGAGAGGGGCAGCAGGGCTACAAGAGCTACTCAAGAGCCACGCTGCCGGAGCCAAACCCCACTCACACGTCCGGCTCAATCTCCTCGAGTGCCTGAGAAGGACGTTAAAGGACTGGAGCACTGACAAGACCCTGGAGTTCCTGTACGGCGGCCACTATTCCCCCGGCTCCGCTGTTGCCGACGTCAAAGAAGAAAAGGCGGCGGGGGAGGAAGACGAGGAGCTGGATGAGGACGACTTCGAGGACGACGTGGCCAACGGGGACGCAGAACGGGCTGGCGCCGGGGCGCAGGAGAGAGCGTCTGCCGCCGTTCCTGACTACCAGGCGCTGCGGCAGGAGACCCAGCAGCTGGAGCTGAGAGTCAGGGAGTTTTATAAAGGGACCTGGATTCTACCGGAGGGGGCAGAGGAGCTGCATGGAAACCAGCAGGGGACAGTCCAGGACCAGAGCACAAAGGACCCAGCTCTGCCGCTCGTTGACTCTCATGCTCAGCACCTCATCCAGAAACGCATCACAGTGGAGAAGCTCAccagctgtctcagaAACGTTGTCGGTCCTTTGAGTCTCACCATCAGTGACTTCTCCACTGACCTGAACAACCTGGTTAAGACATTCAGGTTCAGCAACACAAACATCATCCATAAAACTCCAGAGTGGACCCTCATCGCCATCGTGCTGCTCCATCTGTTGTCGGAGGTGTCTCCGGTGGTGCGAGAAGCCCTGGAGACGCGAGCATCAGCCGAGTATTTGAACACGCTGATGGAGGAGCTTGGTCTACAGGAGCAGGACCTTCTGAATTTAGTGCGGCTGTTTAAAGCCCCggcacaatgacacacacacacacacacacacacacacacacacgcacaggcacaggcacacgcacacacagacacagatgcacacagacacagacccaCAGAGATGTGGACATATGAATACTAAACATACACTCAGGATCACTGactgaattaaataaatatgtggGTATCCGGCATTTTCTATGTTTGTTTTCCACAAATAAAGTTGTAATAACTTTTGAAACCAAA

Function

GO: NA

KEGG:

id description
K20827 RPAP2; RNA polymerase II-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161526 lncRNA upstream 23731 33597873 ~ 33598657 (+) True G119922
TU161502 lncRNA upstream 60317 33538172 ~ 33562071 (+) True G119901
TU161485 lncRNA upstream 106965 33514011 ~ 33515423 (+) False pkn2a
TU161341 lncRNA upstream 331808 33290330 ~ 33290580 (+) True G119767
TU161328 lncRNA upstream 353186 33268370 ~ 33269202 (+) True G119763
TU161561 lncRNA downstream 167493 33811076 ~ 33851937 (+) True gng12a
XR_005640825.1 lncRNA downstream 217855 33861438 ~ 33866996 (+) True LOC120569016
XR_005640826.1 lncRNA downstream 223812 33867395 ~ 33870784 (+) True LOC120569017
TU161570 lncRNA downstream 224186 33867769 ~ 33868000 (+) True G119961
TU161572 lncRNA downstream 224803 33868386 ~ 33868686 (+) True G119963
XM_039816907.1 mRNA upstream 11785 33602063 ~ 33610603 (+) True cdc7
XM_039816908.1 mRNA upstream 11785 33602064 ~ 33610603 (+) False cdc7
XM_039816900.1 mRNA upstream 20937 33574164 ~ 33601451 (+) False hfm1
XM_039816901.1 mRNA upstream 20937 33579048 ~ 33601451 (+) True hfm1
XM_039816902.1 mRNA upstream 20937 33579048 ~ 33601451 (+) False hfm1
XM_039816651.1 mRNA downstream 14216 33657799 ~ 33661745 (+) True rpl5a
XM_039816366.1 mRNA downstream 39118 33682701 ~ 33698786 (+) True mtf2
XM_039816500.1 mRNA downstream 58049 33701632 ~ 33729640 (+) True ccdc18
XM_039816501.1 mRNA downstream 58049 33701632 ~ 33729640 (+) False ccdc18
XM_039816502.1 mRNA downstream 61092 33704675 ~ 33729640 (+) False ccdc18
unassigned_transcript_564 other upstream 220066 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 314524 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 456288 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 575254 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 840917 32780988 ~ 32781471 (+) True G119585
TU161565 other downstream 214959 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 311600 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 520520 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 673565 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 757218 34400801 ~ 34404001 (+) False rps28

Expression Profile