RNA id: XM_039816912.1


Basic Information

Item Value
RNA id XM_039816912.1
length 2183
RNA type mRNA
GC content 0.51
exon number 19
gene id glmna
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33611613 ~ 33622422 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGACAGCACATGGAAAGTGTCCTGTCTGCCTCCTGCGTGAAGATAAAGCCCGCCTGAAGACAGCAGGGATGGCTCTGGAGCAGCTCAGTGATGTGGTCCAGAGATGTCAAGCCCTGCCTGAAGACCGCTACACCACAGAGGACCATGACGTGTTCACGATTTCTGGGCGGACCTGCATCGAGGAGGGAAACAGCGCCCAGGTCCTCAGTATTGTCCTGGATGAAAAGAATCAGGACATAGTGAGATGTATGGGTTGGAATCTGCTGCCTCCCCTGATCCAGGTTCTGGTGAAGAAAGAAGACAAGAAGCTTTCTCAATGCCTAGCCATTTTCAACCACCTGCTGCAGACCTGCAGACCCAAAGAGCTGCTGATTGGCttgttggagcagctggagCAGGATGACCCTGACACCATAGCAACGAGCCTCCATCTGCTGCTGAACCCTCTACAGAAAGTGCTGCTGTGTCTGGGCAGCCGGAAGGCGTCGTCCCTGGGCATGactctgtcctctgtgctgGACCAGGTGGCCAAACTGCCTCTACCTCACAccaaggagcaggaggaggacgaCGTCTTCTCGCTGTGTCGCTGCTGCACCGATCTGATAGACTTTGTCAAGCCTTTTGTCCACGAGGCCAGGCAAAATCTCCTGAACACCGAGGCCCGACATGAGAGGGAGCAGGGAAGGGATAACGAGGACGAGCTGCAGACAGAGCTGCTGAAGTTCTGTATGAAGACTCTGAGTCACCCTCTGCTGGAGGTACAACTCAAGGATCCGGACACTCTGGCTGTGTCTCCCCTCAGGAATTTTGCCACAGAGATTTTGAACACCCTCAGTGCTATCGGAGAGTCTGTCCCCAGTCTTGTGTACCAGCCTCTGTTGAAAAGAAAACAGGTTCCGGGCTTTCTGGAGGAGGAGGTGCGTTATCCTAAAGAGTCTTTGGCCAGCCTGGCTCACCTGGTGTTTGTCCATCACCTGGCCGCAGATACATTCCCCAGTGTTTTCAGTCCCGTGTTCTGTCTCCGGAGTAACATGGAGCACATTTGCCTCCTCTTGTCCAGAACTGAGGAGTTCAGGATTCAGAAAGGACTGGAGCTGTATGAGAAGAGTCTGGTGCGCGTGGAGGATTGCAGTCTGCATGCAGATCTGCTGGAGATCAAAACCttcctcacggtccctcagCACATGGTGAAGGTGATGACGATATGTCCGAGGCATGATTTGAGAACCAGAGGTCTGAAGGTGTTGCAGCTGAGCATTGATAAGTTTGACACCGAAGCCAAGTACAATCTTTTCCAGTACATGCTGAAAACCAGCAATCACTCAGGAGTGGAAGGCTACGTCATCAAAAACATCAAGAATCAGATAGATGTTGCCCTGCAGCCTGGTAACAGTAACACCTGGTTCGTGGGAGCTCACCTGCTGCCTTTGCTGCGTAAAGTTCTCAGTCTGCCAGACGGCCCAGAGACCGACCTCCTGCATTACCTGGACagAGTCATGGAGTCCCTGAACCTGCTGCGCTACCTCGTCATCAGAGACAAAGCGACAGACAACCAGACAGGGATCTGGACCGAGCTGTATAAAATAGAGGACACGTTCCTGAAGCCGCTACGTGTTGGAGTGAACATGTCCAGGGCTCACTATGAGAGGGAGCTCCACAACACCATGGCCACCACGAGGGCTAAGGCCAAAGAGGAGTCTGTGCTTTCTGTGTCCGTTGGCGACGAGAAGCTGCCGAACATGACCTCAGAGTCCCAGATTCAGGCTCTGCACTCAGCCCTGCACACGTTTGACATGATCGAGAGCGTGTTGGTGCGAATAGAGGAACTCACCGAGGGGGAAGGAAAATCTTTAGACTGAGCCCATCGGTTTTACCACCAGAGGTTGTCATCGTCTCAGGGCCTAGTGAACAATAAGAGCCTTTGACTGTTCCAACTTGCTGTACTTTGAAATAATGTATCCACAGCTGATGCTGCTCATTAACAACAAACAGTTAACAAATTGTGTGAGTGcgtttccttttcattttttccccAAGCATATCAAGTTGTTTTCAGCAGGTCTGCTGAGTACTTTAAAATGTTGCATAcattgtctataaaatgttcaaatattgACTGGAAAGTTTGTATCGCTTCTGTAATAAATGTTAACTCTTGTACACGTACGAGTTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161584 lncRNA downstream 226 33600970 ~ 33611387 (-) True G119973
TU161517 lncRNA downstream 55601 33555584 ~ 33556012 (-) True G119916
TU161496 lncRNA downstream 93457 33517176 ~ 33518156 (-) True G119896
TU161495 lncRNA downstream 95455 33515793 ~ 33516158 (-) True G119895
TU161481 lncRNA downstream 111660 33499634 ~ 33499953 (-) True G119881
TU161593 lncRNA upstream 14093 33636351 ~ 33684690 (-) True G119982
TU161596 lncRNA upstream 17354 33639612 ~ 33643648 (-) True G119983
TU161601 lncRNA upstream 23026 33645284 ~ 33646385 (-) False gfi1aa
TU161608 lncRNA upstream 37084 33659342 ~ 33662533 (-) True G119990
XR_005640786.1 lncRNA upstream 93135 33715393 ~ 33718251 (-) True LOC120568796
XM_039816905.1 mRNA downstream 33771 33561200 ~ 33577842 (-) False znf644a
XM_039816904.1 mRNA downstream 33771 33561200 ~ 33577842 (-) True znf644a
XM_039815356.1 mRNA downstream 78901 33520706 ~ 33532712 (-) True gtf2b
XM_039815453.1 mRNA downstream 177688 33421691 ~ 33433925 (-) False selenof
XM_039814667.1 mRNA downstream 210290 33385763 ~ 33401323 (-) True LOC120567699
XM_039816916.1 mRNA upstream 22837 33645095 ~ 33649517 (-) False gfi1aa
XM_039816917.1 mRNA upstream 22837 33645095 ~ 33648364 (-) False gfi1aa
XM_039816915.1 mRNA upstream 22837 33645095 ~ 33648364 (-) True gfi1aa
XM_039816858.1 mRNA upstream 42455 33664713 ~ 33679787 (-) True dipk1aa
XM_039816820.1 mRNA upstream 236312 33858570 ~ 33861288 (-) True gadd45aa
XR_005640728.1 other downstream 354677 33219724 ~ 33256936 (-) False LOC120568437
TU161146 other downstream 759216 32849719 ~ 32852397 (-) True G119631
TU161133 other downstream 779120 32828385 ~ 32832493 (-) False LOC120567697
TU161092 other downstream 846462 32762447 ~ 32765151 (-) False fcer1gl
TU161606 other upstream 32044 33654302 ~ 33659276 (-) True G119989
unassigned_transcript_565 other upstream 562758 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 606368 34228626 ~ 34229050 (-) True G120168
TU161906 other upstream 778565 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 1146183 34768441 ~ 34768514 (-) True trnan-guu_9

Expression Profile