RNA id: XM_039816919.1


Basic Information

Item Value
RNA id XM_039816919.1
length 2293
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120569075
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22689074 ~ 22694675 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attaaaataaacacaacatacataccATAAATGTTATTCTACTGGTCTGCACTTGCTCTGATGGTTTTAAAGAAAGGAATAACGGAGTCGAGGCAATTCATCAGTAGACCACAAGCTATTCGGGGGTGTGACTACAGTCACTGGGGTCTATATATTGAGATGTTTTGTCCGGTGGCACTGGCTTTATGTGAATGAGAGAGAAGCTGCCCAGTGAAAAGTCAACACAGTAGGACAGTGCGCTTCCTCACTTTGACACCATATGCTCACAGACGCCACAATGGATTCCCGTTTTCGCGCACTTTGCATGACTTTTGTTCTGGCATCGTTCACCCGGAGGTCAGGTGCGGTCGGACCGGTTATCAGATGCGAGCCATGTGAAGTTGGAGCGCGGCTTTTGTGCAAACCTTTACCTAAGGACTGCGCCGAGAAAGTCCGCGAACCGGGCTGCGGCTGCTGCATGACTTGCGCTCTGAGCTTCGGCCAGCCGTGCGGCGTGTACACCGGGAGATGTGGCTCCGGACTGAGTTGTCAGCATCAGCCCGGTGAGACGAAACCTCTGCAGGCTCTGCTGGAGGGACGGGGAATTTGTGCAAACGCTACTAATAAACGACTTACCGCCAGACCAACACCTCCAGTCAATGAACTGCCAGCAGAGAATATTGAGCCTCAGGACAATGAGCGGAATTCCACCGGCTCAGGCCTTCAGACCTCATCCAGCACCCACAGACCCATGTTGGGACCCCTGAGACCTCCTCTTCACCCCTTTTTCCCCTCTGTCAAGTCAGAGGTCCTCGGACGGGAGCAGCAGAAGAAAACCCAGAGCTTTAAAATGGAGGAGCTCCCAGGACAACTTATCATAGACCAACAAAACTTCTCTCTGGAGACAAAACAGGAGCCTGAGTATGGTCCCTGTCGGAGAGAGATTGAGAGCATTCTCAGCAGCCTCAAGATTACAGACATTCTCAACCCCAGAGGTTTCCGCATACCAAACTGTGACAAGAAGGGCTTCTATAAGAAaaaacagTGCCGTCCATCCAAAGGCAGAAAGCGAGGCTTCTGTTGGTCTGTGGACAAATACGGGAATCCTCTGCCAGGTTTTCATGGGAAGGAGCGAGGAGACGCCCAGTACTACAACTCTGAGAGCCAATAGGAGCAGGACCAAGCCGGAGGGAAGGTGGGAGTGAGAGCAAGAAGAATTGTAAACAAATGGAGACACTGAGGATATTGGGAGAGAGGTCAAAAGATGGCTCAGCCGATATATGGATGTTTGCTTTTTCTATCTGTTGCCTGTGGGACCTTTTTCAGAGGCAGAGCATAAGGAACAGAGGAAGAGTACcaggagggaaaaaaagcctTTGTGTGACAAATGCTGTACTTTTCTGCGATGGTTGGATTCTTCATAAGCTTTTTGTCTACAACTTCAACCAGGACAACTTTTGAGAAGAGGATACACTTTAAAGAATTTATCTCAAAAGCCTTATTctgaatataaaacacaaagacatttgTCACAAACATTGAATGAGTGCGCTATTCATTTACGCACAATTAAGTGGCATTGCACACGTGTACATGCTTGTGATGTGTAATCATAATTTGTATGCTTGTGATTTGTTATAAAGACATTGTGTGTGGTCACAACAACCATGTAATTTATGTATGCATGAATATGTCCTTCGGAGTAAGCATGCAGTGCCTTACTATGAATTCCATTTTTTTCCAGTTGCTTCCTGCTCCTCGAGGAGTTAGACTGGACTGTGCAACTCAAACACTACAGTGCgcataaagttttttttaaactggatcTGAAGCCACAAGAAGACGGACATTTCCTTTAGTCTGTACTGTGGttgttaatgttttgttgtCACTTTGCATAAGCTGAATTGTTGGGATAAAGTCCACAAACTGTTATCTCTGATCTCTGTGTAGCCAGTGATCATTTTCATCACTTCTCCTCGGTTTCAGTAAATACTCCGTTTGCATGTAAAATGCAACCCTCAGAGGTCTATTTTTACTTAATAAAGGCAGTATAAAATTATCCAGGTATTTTTCTCCTCATCATGCCTTCTCTCACTTTGAGTGTGTATGAAACAGACTTTTTTGGCAgttgaaaaacacatttaaacatgaccatgtgatgatgaaataacattttattggATGCACATCCACAGAATTACTGTAGAAGAATATATACACTGATTCAACAAAACCAATAATAGAATAGCAGCATTCCTGCATAGTATACACAAACAATCTGGTCCACTGCATATGAACtctcaacaacaaa

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157764 lncRNA downstream 14624 22670733 ~ 22674450 (-) True G117055
TU157760 lncRNA downstream 56806 22629896 ~ 22632268 (-) True G117052
XR_005640797.1 lncRNA downstream 483083 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA downstream 488094 22195324 ~ 22200980 (-) True G116954
TU157587 lncRNA downstream 510540 22178293 ~ 22178534 (-) True G116922
TU157840 lncRNA upstream 112398 22807072 ~ 22809753 (-) True G117112
TU157848 lncRNA upstream 130699 22825373 ~ 22825583 (-) True G117117
TU157843 lncRNA upstream 138392 22833066 ~ 22834881 (-) True G117114
TU157851 lncRNA upstream 141381 22836055 ~ 22865958 (-) True G117119
TU157870 lncRNA upstream 265841 22960515 ~ 23110187 (-) True G117137
XM_039815109.1 mRNA downstream 66196 22576333 ~ 22622878 (-) False LOC120567969
XM_039815108.1 mRNA downstream 85530 22576333 ~ 22603544 (-) True LOC120567969
XM_039815110.1 mRNA downstream 88854 22576333 ~ 22600220 (-) False LOC120567969
XM_039814976.1 mRNA downstream 115267 22525261 ~ 22573807 (-) True phlpp1
XM_039814974.1 mRNA downstream 185495 22496072 ~ 22503579 (-) True opn7a
XM_039816311.1 mRNA upstream 8790 22703464 ~ 22738248 (-) True LOC120568657
XM_039815352.1 mRNA upstream 44960 22739634 ~ 22757614 (-) True LOC120568106
XM_039815353.1 mRNA upstream 44960 22739634 ~ 22757612 (-) False LOC120568106
XM_039814977.1 mRNA upstream 121292 22815966 ~ 22824647 (-) True LOC120567909
XM_039815743.1 mRNA upstream 477384 23172058 ~ 23177122 (-) True psma8
TU157659 other downstream 420515 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 425576 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 1678505 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 2893365 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 3223694 19464700 ~ 19465380 (-) True G116138
TU158039 other upstream 735692 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 773946 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 1173278 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 1174481 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 1325688 24020362 ~ 24020438 (-) True LOC120569137

Expression Profile