RNA id: XM_039816922.1


Basic Information

Item Value
RNA id XM_039816922.1
length 2129
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC120569077
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38039081 ~ 38098246 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTACGATGCTTGGGATAGCGGTGGCAGGTCGGCCCGTTCACTAGGCTACATCGGCTCCTGCCGGTGAAAAGGACATATTCATCCGTGGCTTTGACAGCCTCTCCGTGGACACCGACTGTTGACAGGCTCCATGGGCGCTGCTCTATCCGTGCACTACGCGCTCTGGTGATCTATGGTGACCGGCTCGCCTCGGTGGAGTTGGTGACCCGTCGTTTTTTTAAGTTTCTATTTGAGCGGAAAGGATTGTTAACGCAACCCCACCCGTGCCTCTGGGATCGAGGAAGGCAGGTGAAAGATGGGGAGCACGATCTCTTGCTGCGTGTCTGCCAGCCCCAAGCTCCGCAGAAACACCCACTCCAGGCTGGAGTCGTACCCGCAGGAGTCCGAGCTGGGCAGGGAGGAGACGGGATGCAACCTGCAGCACATCAGCGACAGGGAGAACGTCGACGAGTTGAATATGGAGTACAATCCGTCGGACCACCCGCGGGCCAGCACCATATTCCTCAGCAAATCCCAGAACGATGAGGCGCCCTGCAGGAATGTGCGAGACAAACGAAAAAGCCTCTTCATCAATAATcacgGAACTTTGAGGCGTAAATTCAGCTCCTGCTCCACCATCTTCCTCGATGACAACACCGTCAGCCAGCCCAACCTCAAATACACCATCAAATGTGTAGCACTGGCCATTTACTACCACATAAAAAACAGGGACACAGAAGGAGGGATGCTGCTAGATATATTTGATGAGAAGCTTCACCCTCTTTCAAAGTCCGAGGTGCCGCCGGACTATGAACACCATGACCCGGAGCAGAAGCAGATCTACCGGTTTGTCCGGACGTTGTTCAGCGCCGCTCAGCTCACTGCTGAGTGTGCCATCGTCACACTGGTCTACCTGGAGAGGCTCCTGACCTATGCAGAGATTGACATCTGTCCAGGGAACTGGAAGAGGATTGTTCTGGGTGCTATCCTGCTGGCCTCCAAGGTCTGGGACGACCAGGCCGTCTGGAACGTGGACTACTGCCAGATCCTCAAGGATATCACCGTGGAGGACATGAACGAGTTGGAGCGCCAGTTCCTGGAGCTGCTGCAGTTCAACATCAACGTGCCGTCCAGTGTGTACGCCAAGTACTACTTTGACCTGCGATCGCTCTCAGAGACCAACAACCTCAGCTTCCCTCTGGAGCCACTCAGCAGAGACAAGGCCCAAAAACTAGAGGCTATTTCCAGGCTGTGTGATGACAGGTACAAGGACGTACGGAGGGCTGCGAGGAAGCGCTCTGCCAGCACGGACAATCTATGTGGGATTAGATGGGTTCCTGCAATCCTCTCCTAATCACTATTCATCTGCCATGTACTCACCACTGGCATCAAGCTACACACTCTGGCTGGATGAGAAAACGCTAGTGGAAACAGGCCAACATGGTTCTGGGCAGAGTTCAAAAACTTCAGTTTGGATAGCCACATAATACAAAGAATTGAAACTTGGTGGAACAGTgattaaaagcaaaaaaaacaacctctggACGTCACACCTTCAAACTGGAGTCAAGAAAGTGAAACCTCATCTGTAGTTTTGGGAGGTGAGGTGAACGCCAAAGAGGTTTCTAACTTAACCTGATGCCTTCACAGTGCCTCGACTCTTCGGATCACGAAAGACAGAAGGGACTTCCTGGCTGTTATGTCATCCGTGGGGATCAATCTGTTCCATAGTGAACCTGTCTTCATGTATCGGCGCAGTTCAGTTCTAATTCGAAAAAGACATAACTGACATTTGACATGACCTGCCTTTGAGATGGCCCTGCAACTTCATAATGAagcatattatttatttgacgTTGATTATGTGAACTTATGTGAGCGGTTGCAGCTGCCTGAACCCATAGCACCTGCAGAATTCCAGTAGTGTAGTTTCTTCTTAGAATAATAAAAGTGTCAGCAAGTTTTCAGCTTTGGAAATACGTATATTCAAGGTTTACAGTATTTCTAGCATACCTCTCGATACTCAGGTAGTCTGTTTAATCTTTTGATTTATTGTGATGCTCCTCTAAGGATTGAAACACAACATATGAACAGTGACAAACAAATTGCAGATGGAAGGAGGAAGAATAAATACAAATGTGACAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162826 lncRNA upstream 13876 38024995 ~ 38025205 (+) True G120993
TU162818 lncRNA upstream 35141 38003686 ~ 38003940 (+) True G120987
XR_005640603.1 lncRNA upstream 147365 37885385 ~ 37891716 (+) True LOC120567664
TU162741 lncRNA upstream 625885 37339102 ~ 37413196 (+) False G120922
TU162740 lncRNA upstream 696242 37339102 ~ 37342839 (+) True G120922
TU162828 lncRNA downstream 1898 38100144 ~ 38100905 (+) True G120995
TU162830 lncRNA downstream 1938 38100184 ~ 38100905 (+) False G120995
TU162863 lncRNA downstream 58107 38156353 ~ 38156690 (+) True G121023
TU162864 lncRNA downstream 89729 38187975 ~ 38188247 (+) True G121024
TU162873 lncRNA downstream 331415 38429661 ~ 38430105 (+) True G121032
XM_039815841.1 mRNA upstream 20013 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA upstream 20013 38011766 ~ 38019068 (+) False LOC120568367
XM_039814685.1 mRNA upstream 440656 37597814 ~ 37598425 (+) True LOC120567716
XM_039815045.1 mRNA upstream 808370 37209305 ~ 37230711 (+) True LOC120567940
XM_039815567.1 mRNA upstream 951638 36879918 ~ 37087443 (+) True LOC120568208
XM_039814686.1 mRNA downstream 4331 38102577 ~ 38103710 (+) True LOC120567717
XM_039816328.1 mRNA downstream 522090 38620336 ~ 38628410 (+) True LOC120568674
XM_039814943.1 mRNA downstream 720801 38819047 ~ 38843071 (+) True pitrm1
XM_039816250.1 mRNA downstream 1387884 39486130 ~ 39522532 (+) False frrs1a
XM_039816251.1 mRNA downstream 1387884 39486130 ~ 39522470 (+) False frrs1a
TU162816 other upstream 20043 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 733067 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 1020291 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 1632392 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 1633308 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_597 other downstream 98795 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 657438 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 1293726 39391972 ~ 39392776 (+) True G121171

Expression Profile