RNA id: XM_039816925.1


Basic Information

Item Value
RNA id XM_039816925.1
length 4881
RNA type mRNA
GC content 0.48
exon number 5
gene id fam110b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8665348 ~ 8704766 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAAGGTGGACTACTACATTTTGGCTCATCGTGACGCGAGGCGGCCCTGTTGTTGACATGGGCCACAATGTGTACCGTGATCGCGTGCTTCCTCATTCGCCACGTTGTCAAATGCTTGATAGCTGTGTGGAATTCCAGGAAATGCTCTTCCTGTGCTGTGAAGCCCACTGACAACCTGCAGCACCTGGAGGAGAAGGGGGAGGCGCCCAGTTCCAACAGCCACTAGCAAGATCTTGGAGCATAGAAGTCGCCAATAGGCTCAATAGGACAGCTCCAAACTGATAGTGTGTGTGGCGAGCTGAAGGGAGAGCTGAAGCGAGCGTGGAGAGGCGGCGGGGCTTTCCTTTTCCACCATCCTCTGCTTTTCCTTCGGCCCCCGTGGAAGCACTCATCCACACCACTGCACTGAAACACACTCATCactctcttttccttctttccGTTCTGTCACTGTacttgttctctctctttctatccatccatctgtccatCTTGCTTTAGGAACAGGTCAGCTGAACCTAAGCATCACAAACCAGTAAAGACCAGTGATACCAGTTGTCGAGCTGCAAGCTGAGTTCCTCCTGCTCCGGCAATGCAGTGAAATATTTTGGTACAGCAGTTGAGCAGCCCCCCAGCCCAGAGTCTGGCTCGGCACCGCAGGATCCCACAGGCGATGAGGCGGGCCAGGGGGTTTATCTCTTTCTAGACTTTCTCTTCTTCCACCTTGTGTCTTCATGTTTTGGGGGTCCTCCGGTGCCCCCGCCCTCTGTCGACCCCCCCGCACCCACTGCCACCACGGCCGGCCACCCCAGTCGCCTCGTTGCCATGCCGACAGAGACACTGGCTCCAGCCCTGCCAGATAGCAAGGCCGCCGGCCCCGCGACGGCCTTCAGTTCCACCGTACCCCTCCGCATCCTCAACAAGGGCCCTGACTACTTCAGGAGacagGTGGAACCTAACCCAAAGCGTCTCAGTGCTGTTGAGAGACTAGAAGCTGACAAGGCCAAGTATGTCAAGAGCCAGGAAGTTATCAATGCCAAGCAGGAGCCAATAAAACCACCCGTGATGGCTAAGCCTCCTGCCGGTCATACCCTCCTGGCCAAGAGAGGCTCTGGGATTAGTGGAGGAGGAAATGGAGGCGGGATACCTTTCAAAGCATCCAATAACAACGCAAAGTCGGACACATGTGCAAcaagcagcggcagcagcaaaCGGGAGAATTTAAATCTGGAGATCCTTAAAAATCTGCTAAACTCATCGTCCTCTTCAGGAGCGGGATCTGAAGGACTAGGAGGTGGAGCTAAGAGTGCTGTGTTGATGAGGTCATCAGGGGGAATGGCCAGGAGTTGGACGCCATCAGGGATGCCGTTAACCTACCGATCTACAATGGCGCTTAATGAGCAACCGCCAGAACTAGCTCCCAGTCCGAGCACCTCCCACTCCCTCCGGTCCTTCTCCCATTCCCTGAAGGTTCCTCCGATCAACGGCGGGGGACGCCGCAGCCCACAACCGGGAGGAAACCTCAACCTCAGCAGACGAGGTGAAGGAATCATCGACCGTTCTCGCTCCCCGCTGCCGCCGCTTCTCACCTCCCACTCCTCGTCCGACCTCCTGCGGCTCTGCAACGGCAAGCCCCTTCGCGCGGCCCGATCCAGCAGCTCCTCAGCTCCGCCCCTCCCTCCAAAACCCAAccccacctccctccctcctcccgcgCTTTCCTTGTCGCTGCCTCCCCCTCGTCCAActccatccccctctctctgtgaCAACGTCACCCCTCAGTCGCTACCTTGTGATTTCGGAGGCCCTTCCCATATCTCAACCGATGCCAATGTGGAGCTCGAGCTTGGTTCATCCGTGGCTCGTCGCTCGTCGCTGCACAGATCTAAATCGGACCTGTCGGACCGGTACGCCCGGGCCGGAGCTGACGTGGAACGCTTTTTTAACTACTGCGGCCTGGACCCAGAGGAGCTGGAGGCGGTCGGTCCGGAGAACTTTGCGCGGGCCAACTCGGACATCGTCAGCCTGAACTTCCGATCCGCTTCTATGATCTCGTCTGACTGCGACCGGTCGCGGCGATCGTCCAACGACGGGCTGTCGGACGGGgaagaggacgaggaggaggaggccggAGAGCGTGTTCCGTACGGCATCTCGGCCGTGGAGCGAAACGCGAGAGTCATCAAGTGGCTGTACAGCATCAAACAGGCGAGAGAGACGCAGAAAGTCTCTCACGTTTAGAACAAGCACTACAGTGGCTAGGATGTACTTTAAACTACAGACAAACCGCCCCATGTTTCAGAACCGATAGACGGACCAGAATTTCTCATAGGTTTAGGGACTGTGATCTTGGCGCCGAACTAAAAGAAATTGTGAAAATGCatagatggatgaatgaatagATGGAAGAGAAAGCTGACAGGTCTAACAAACTTGGtgaaaaaaacagatttttttttttagaaatgaatAAAGAGATGATGAAAAGGACTCTAACCAATAAGGTTTAGAACAACATGAACACTATGAACGGACAGAAATAAAACTTGGACAGTTAACAAAATGTTCCGTCTGGAGAGACAAACAACGGGACATGTCTGAAAAGAAACTAGACAGCTGTATCTCTCTGGACACTGAATAATATGACGGACAAAGTCTGTCAAGAGCAAAATGCACTGCGATTGTCTAAGGACCCATAAAGTGACCACCTCACTACAAATGATCATAGGCCTTTCTCACAGAGAACAATTGGGCTTGACTAATCAAAGCCTTTTTAATAAGTGGGATTATCTTCCTACATAGAGCGCTAGGTAGCTAGCAAGCTATCTGTTCAGTCCACGCTGACTTCAACCTTCGTTCTGCCATCTCTGTCCTCGGTCACAGCTGTCCAGTCGGCAGCTCCTGAGAAGCCGAGAGGACGCCAGCTAGGCAAACTGTTCTAACCATGCAAACACGGTAGAAATGTACTGCGGTGTCGCGCGTGCGTCTCCGAGTTAGTGTTGATTGATACATGTGGTAAAACAGAAGTGTGTATGTTCCATGAGTCGGGGCGAGGGACTGACGTGAAAAACCcttaaaaaaaacgttttctATGTGGATTGATCAGCGTATTTCTTTGACCAATGTTAGGGCTGTCACTTAGTCATAAGTTGTTTTATGCCCATAAATATTCAAAATGCTTGATATGCAATTTATCGTAACACATTATAAAGCGTTTTATGATGACTTTTAAGGTCAAGTCTCATAATACCAACCAGCCaaccaacatttatttatattgccCTTTActgcaaccagcaggtatccaaagtgctttacatcaaagaccaataataaaaaacataacatacagtaaaatcTGAAAAGGTTACATAAAAgcaggaggaagaaaggaaaaatgTCCCAGCGCTACtatgtattaaaagccattctaaataaataagtttCATAATTGCTGGTCACTCACTCACATTTCTTTTTGCAAGCATCATAGAGTATTATGGTTTGCTGGTTTGCGGTGCCTCCACTGCCTCACTAAGTGACAAGCTTAACGGGTGACTGCAGATTTGTTGTGTTAATGTTACCGTAAGGCAGTCAGCGAACAGCTTTACTTTTATCCACCATTTCTTCAAATCTATGGTGTCAAATCCAACATTCTTCTCTCCATTACTAATAAGATGGTTTGGTGCCATGATTACCTGTTCAGCATAGCTCACTAGTTACCACCGTTTTGCGATAGCAAAGAGAACAACAGCCTAGTAGATCAAAGTGGAATTAACCAATACCCCCGGCCGCTGGACTACAAGGCTGTTGCACTTTTGAAGTAATTACAGATCAATACATTTGACTCAATTGAACAGTACTTTGAATTTCAGATAAAAAGTGACAACGCTAACCGACTTAATGTTAACTGCTCCTAGCTTCTGTGTAAACTGAAGCTCACTACTTGTTGGTCAGGGCCACAAATGTCAGATGTCCACTTTGAGAAAGGCCTATGTCACAGTGTTGATGTCTCCgtttaaacaaacttttaaaaagggTCCTGACATCATTTGCAAAACAGATATTGAACTCTATCTGTCAAAAATGAGAACTCCCATTGGAAAGTCAATGCTGGTGCACTGTTTGAACATAACAAGGTCAGTTACGGTGATATTTTTGTTATTGGTGACTGTTGAAGGAACATTTCAGCCCTAACTAAATGGGTTAGTTGTTGTAAAACTATGACACAGCAAAATGTTGACAAACTCATGAAACACAAGTGATGATGAGCTAGCTTTAGCTCTTGTTAAGCTAGATATTGTATTTGCTAAATGAAGGCCCTGTAGTGTGTGATGACTGAGTAATGAAGGAAACCGTTGACACTGAATGATTTGGACAGATATACACACGATATCAAATATAATCTCTCAAGCATACTTATCCGTACAGCATTAAGGTTACAACGTCATATCATTGTGCTCATACGTACATTATAAACAATTCTGTCATCAACCTGTTCATGTGAACCAACGAAACATATAACTGGAGAGTTTTAGTGTCCTGTGATTGGATATGGTTATTCAGAGGCTCCACACTGAAGAGAACCCTGCCACTTAACATTCAAAGAATGAATGCATGTCATTTGggggatttttttgttgttatttaaatGGTGAGATTTGGTCAAATGGTTAAATGTACTAAATATTGTAGGAGGCATAATGAATCACTAATGGCACGTTGGTTGGGGTAGTTCAGTTCAAATGAACTCTGGTGCGTTTGcccatttaaagctttagtgtgtaacttttttatattattgaacgtccgttacattcaagccattgccaaatgagtttctACAAAGCAAATTAAgtctccacacaactctctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152327 lncRNA upstream 23312 8628572 ~ 8654614 (+) False G112999
TU152328 lncRNA upstream 38679 8628572 ~ 8639247 (+) False G112999
TU152330 lncRNA upstream 42210 8628572 ~ 8635716 (+) True G112999
TU152326 lncRNA upstream 45752 8628572 ~ 8632174 (+) False G112999
TU152317 lncRNA upstream 107191 8570466 ~ 8570735 (+) True G112995
TU152353 lncRNA downstream 5551 8710317 ~ 8716540 (+) True G113016
TU152392 lncRNA downstream 52115 8756881 ~ 8765533 (+) True G113042
TU152390 lncRNA downstream 60295 8765061 ~ 8765533 (+) False G113042
TU152403 lncRNA downstream 66381 8771147 ~ 8772044 (+) True G113050
TU152388 lncRNA downstream 84460 8789226 ~ 8795792 (+) False LOC120568415
XM_039816295.1 mRNA upstream 56250 8596386 ~ 8621676 (+) False LOC120568645
XM_039816297.1 mRNA upstream 56250 8596386 ~ 8621676 (+) False LOC120568645
XM_039816293.1 mRNA upstream 56250 8603405 ~ 8621676 (+) True LOC120568645
XM_039816294.1 mRNA upstream 56250 8603475 ~ 8621676 (+) False LOC120568645
XM_039816509.1 mRNA upstream 136303 8540381 ~ 8541623 (+) True ptf1a
XM_039816927.1 mRNA downstream 3895 8708661 ~ 8715135 (+) True atg10
XM_039816928.1 mRNA downstream 13103 8717869 ~ 8736105 (+) True fam151a
XM_039816929.1 mRNA downstream 13103 8717869 ~ 8736105 (+) False fam151a
XM_039816930.1 mRNA downstream 13103 8717869 ~ 8736105 (+) False fam151a
XM_039816931.1 mRNA downstream 13103 8717869 ~ 8736105 (+) False fam151a
TU152286 other upstream 223510 8406940 ~ 8454416 (+) False LOC120568257
TU152240 other upstream 364850 8309850 ~ 8313076 (+) True G112932
XR_005640625.1 other upstream 775639 7885498 ~ 7902287 (+) True dnai4
TU151912 other upstream 1642226 7035027 ~ 7035700 (+) True G112670
TU151896 other upstream 1668769 7007242 ~ 7009157 (+) True G112655
TU152347 other downstream 4563 8709329 ~ 8712997 (+) False atg10
TU152348 other downstream 4563 8709329 ~ 8712997 (+) False atg10
TU152352 other downstream 8499 8713265 ~ 8715271 (+) False atg10
TU152445 other downstream 108419 8813185 ~ 8817757 (+) False LOC120568881
unassigned_transcript_539 other downstream 167846 8872612 ~ 8872684 (+) True trnav-aac_1

Expression Profile