RNA id: XM_039816928.1


Basic Information

Item Value
RNA id XM_039816928.1
length 2337
RNA type mRNA
GC content 0.51
exon number 14
gene id fam151a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8717869 ~ 8736105 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aataaCGGAGGCAGCCTTCCTGATGAGTttgttcagtgtgtttgtgtctctggttcCGATGCTGCTGCCCCAGCAGACGATAGAGGAGAACAGAGCgctggccacaacagactggtaGGACATCTCCAACATCCTGCTGCACACGTTGAAGGATCTCAGCTTCCTCTGGAAATGGAGTCTGCTCATCCCCTCCTTGTAAACAGCAGTGCTGTTGATTTTCCAGTTCAGCATGATTGAGACAGTAGGAAGACAGGAGaggatgggagagagagaggtcaatCACAGAGTGGACCGAGGCACGGGAGAAAGTAGGCCTAACCGTAAAGAAGACCTTTATCTGGGctttttaacaaaacaacacCTGATTATGATATCTGTGGCTGTTGGACTTGTCATCCTGGTGATTATCGTTACTGTCGCAGCCGTGCTCGCCACAAAGCAAGGTTCCTCAGCATCTCTTCCCCCGTTTCCTCCTGGTGGAGACATGCTGGACTTCCTGGTTCAGTCGGGTGAGATCAGTGAACCTGACGGTCTGTTGGCCACCTGGTTTCACAGAGCCAATAACAAGGAGGAAATGAACAAAGCTCTCACAAGTGAGGCTATGATCCTGGAGGCTGATATCACTCTGGACGGTTATGGGACACCCAGTGAGAAGCCAATCCCTATCATGGCCCACCCTCCTGACATCTATAGTGACAACACACTGGACCAATGGCTGGATGCTGTGCTGGCCTCTAGAAAAGGCATGAAGTTGGATTTTAAGTCTCTGGGATCAGTGGGTTTGTCATTGGACCTGCTTAGTCAAAAGAACATTAGCAGAGGAATAAACAGGCCTGTGTGGCTGAATGCTGACATCCTTAAAGGTCCCAACACACCAGACTTTGTGCCTCTAGTCAATGGAACCAGATTTCTGCAGTTGATTCAGGAGAAGTTTCCAGATGCCACTTTGTCCCCTGGATGGAAGGTGGCCTATTCTCCTCCATTGTTCACTGCGACCTACACCAGGGCCATGGTGGAAGACATGTACGCTATGGTCAAAGATGTCCCCCAAAAGGTGACATTCCCGGTCCATGCCTTGTTGGTTCGCAGTGGCTGGCAGCACCTCAGCTGGCTCCTCAGCCAGTCACCACGGTTCAGCCTGACTTTGTGGCAGGGTTCTATCCGCCCAAACGTCAGCGACCTGCTGTTCGTCCGTGAGAACAGCCACCCTACCAGAGTCTACTACGATATATACGAACCAACGCTGTCGGAATTCAAACAGGCTGCAAagCAGCAGGGCCTCCTGAGGAGATTCTATCCTGGGGGAGACCTGATGGACTTCCTCTATCCGATTCACAACCCTGACTCCCTGTCCACGGCCGCACAACGCAACAGCCTGGCAGTCCATTGGTTTACAGTCACTGAGCGATCCTCCCTGTTGGCTCAGCTTTCAGatGGTGATGGTGGTATGCTGGTGGTTCAGGTGACCGCTGACAGGAACCAGCCTGAAGTCCCTCTGCTGGAAGGTTCTGGGAAGAGCTCAGAGGCCCTCACACTGCAGgACATCCTGCAGCTGCTCGGGCAGAGAGCTGATGCCCCCTGGGGTGTTCACCTGCGGATCCGCACTCAGCAGCTTCTGGAAGCTTCTCTCAAACTGCTGCACTCAGCCTACAGCGAAGAGACGCTCTACAGGCCTGTCTGGATCAGCATGGAGGGTCTGCAGAGCACTGACAGCACCACGGAGTTTGTATCCACAGTAGAGAGGCTGTTCCCTTACGTCACCCTGGTCCTGACGGAGCAGAACTGGCCTCCTCGGATCCCAGCGACGGGCTGGTCTCAGAGGGTGGCGCTACACCTGAACACCGCATCGCTGCCGGAAGGACAGGAGGCGCGGAACTCTCTAATGGCACTGATGGATAGATATGACCTGATAGTAGAGGATACAACACGCAGTGCTGGAGCTCTCGAGGTCTTTAAAGGACTTGTGAGCCAGCGTACAGGCAGAGCAAACACAAACCTGTATGTGATATCTGATCGATCCTAACGGTGGATGGACTCGACTGACCCAGAGATACGTCAGTTATCACTTAAAAGGATATTTGTGTCATACAGTTGCCTCTTAAAATGACATATTGGAAGAATTGGATATATTGGAAGGCTAATGTTATCAGGCTGATACTGGCTCGTTACTGATCtatccagtccctccagaaaaatgtgattatacGATCGCATAATTCAGTGCATAAtgagccaaagtccgcatatttatgcgggggctgcattttttcaaatacggcgcactttcgccgcataaatcactttttttttcctttttcatcaaaccacagtttttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152353 lncRNA upstream 1329 8710317 ~ 8716540 (+) True G113016
TU152327 lncRNA upstream 63255 8628572 ~ 8654614 (+) False G112999
TU152328 lncRNA upstream 78622 8628572 ~ 8639247 (+) False G112999
TU152330 lncRNA upstream 82153 8628572 ~ 8635716 (+) True G112999
TU152326 lncRNA upstream 85695 8628572 ~ 8632174 (+) False G112999
TU152392 lncRNA downstream 20776 8756881 ~ 8765533 (+) True G113042
TU152390 lncRNA downstream 28956 8765061 ~ 8765533 (+) False G113042
TU152403 lncRNA downstream 35042 8771147 ~ 8772044 (+) True G113050
TU152388 lncRNA downstream 53121 8789226 ~ 8795792 (+) False LOC120568415
TU152458 lncRNA downstream 90262 8826367 ~ 8827449 (+) True G113092
XM_039816927.1 mRNA upstream 2734 8708661 ~ 8715135 (+) True atg10
XM_039816924.1 mRNA upstream 13103 8665348 ~ 8704766 (+) False fam110b
XM_039816926.1 mRNA upstream 13103 8665348 ~ 8704766 (+) False fam110b
XM_039816925.1 mRNA upstream 13103 8677926 ~ 8704766 (+) True fam110b
XM_039816293.1 mRNA upstream 96193 8603405 ~ 8621676 (+) True LOC120568645
XM_039815929.1 mRNA downstream 53104 8789209 ~ 8809459 (+) True LOC120568415
XM_039815930.1 mRNA downstream 59719 8795824 ~ 8809459 (+) False LOC120568415
XM_039816628.1 mRNA downstream 76792 8812897 ~ 8825811 (+) True LOC120568881
XM_039815903.1 mRNA downstream 134636 8870741 ~ 8915851 (+) False LOC120568389
XM_039815901.1 mRNA downstream 134637 8870742 ~ 8920465 (+) True LOC120568389
TU152352 other upstream 2598 8713265 ~ 8715271 (+) False atg10
TU152347 other upstream 4872 8709329 ~ 8712997 (+) False atg10
TU152348 other upstream 4872 8709329 ~ 8712997 (+) False atg10
TU152286 other upstream 263453 8406940 ~ 8454416 (+) False LOC120568257
TU152240 other upstream 404793 8309850 ~ 8313076 (+) True G112932
TU152445 other downstream 77080 8813185 ~ 8817757 (+) False LOC120568881
unassigned_transcript_539 other downstream 136507 8872612 ~ 8872684 (+) True trnav-aac_1
unassigned_transcript_541 other downstream 137589 8873694 ~ 8873767 (+) True trnan-guu
unassigned_transcript_542 other downstream 137867 8873972 ~ 8874045 (+) True trnan-guu_1
unassigned_transcript_543 other downstream 138200 8874305 ~ 8874378 (+) True trnan-guu_2

Expression Profile