RNA id: XM_039816935.1


Basic Information

Item Value
RNA id XM_039816935.1
length 2643
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC120569082
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8736657 ~ 8764268 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTCAAATGATCTTTTCGCACCACCCAAACGAACAGGACTATCCGACCAAACTGCTGAGGTGTGAGAAAAACCTAACAGTCTACGCCAAAACACACCTCAACCGAccttagatagatagagagatagagaaagagagagttacCTGAAAAAACATACAGCACACAAAGAAGCTGCTATAAGGTCCCTCATGTTAGTGAGTTACGTTACAGTCTGTGGATGGGCTGGCAAAGAGAGACTACGTTACATTGCAAACTTTGAAGATGAGTTCCAGATTGTCAGGTGAACCGGAGAAAGAcaaggaggaagatgaggaggaggaggaggaagaagaagaagaagaagaagaagaagaagagagcgtCAACCCGACGGAGGTGAAAATGAGTCAGATAGTGATGCCCTGTCACAGCAACCATCGACAGGAGCTGAGCGTCGGAGAGCTGCTCAAATGGATGGACTGCAGTGCCTGcctctctgCTGAGAGGCATGCTGGGTGTCCCTGCGTCACTGCCTCGATGGATGACATCCACTTTGAACATACCATCAGCGTGGGTCAGGTGGTGAACATCAAAGCAAAGGTCAACAGAGCCTTCAACACCAGCATGGAGGTGGGCATAGAGGTGAGCTGTGAGGACCTGTTCTCTGATCGTCACTGGAGGATTTGTCACGCCTACGCCACCTTTGTTACCCAGCGCACAAACACAGgaaaaaagGTGATCTTGAAGCCCATTGTACCCCACACTGAGAAAGAGCAGGTTGAATACAGCGTGGCGGCTGAGAGACGGAGGGTCAGGATGGTacatgatgacatcatcaaagATCTGCTCTCCGATGGGTCTAACCTGCAGGctgacAACTCAGCAGTAGACAATGCGGTGGCAGCAGAGAAGACCAAGGTGGAGAGTGTTGAACTGGTTCTACCCCCACATGCTAACCATCAGGTGAATACATTTGGAGGGCAGATCATGGCCTGGATGGTGAATGTAGCTACAATTTCTGCCAGTCGTCTGTGTCAGGCTCACCCGACTCTGCGGACCATCGACATGTTCACCTTCAGAGGACCGTCTCAGGTTGGAGACAGACTGCTGCTGAGGGCTATAGTCAACAACGCCTTCAAAAACAGCATTGAGGTGGGGGTGCGAGCAGAAGCCCACCAGGAGGAAGGGCCTAACCGACACATAAACTCGGCCTTCATGATCTTCGAGGTTCTCGACGACCACAGGAAGCCATGCATGTTACCACGGATACGCCCCGAACCTCTGgaaggagggaggaggtttCAAGAGGCCATAGCTAGGAAAAAGATCAGATTGGACAGAAAGTACATCATTTCACGCAAGCAGGGCGAGGTCCCTCTGTCTGTACCATGGAACCCCAGAAACCAGGTGTATCTGAGCTATAACAATGTTTCAGCTCTGAAGATGTTGGCTGCTAGAAACAACTGGCGCCTCAGCTCTGAGAAAGACAAGGTTCGTCTTTACACCCTGGAGCAGAAGTCCACGTTGAGCATCAGGGTGGAATCAGAGGTGGACGTTCCTGCTCACAGAGCCTTCTGTCTGCTGGCGGAGATGAGCAACAGGCCGAGCTGGGACACACATTATCAGAAATGTGAGCTCATTCACCAGGTGGACGAAGATGACTTCCTGTATCGAGTGGTGACCCCATCGGTGCATCGCGGCCGGGTCGGTTCCCCGACCTCAGGCCGTCAGGGAGAAGGGATCCTCCAGGACTTCATCCTGTTGGCATGCAAGAGGAAGCCGTGTGGCAGCGGAGATCCATACGTCATCGCACTGCGCTCAGTGTCCCTCCCCACTCACCCTCCCACTGAAGGGTATAACCGAGGAGAGGTCCTGTGTGCTGGATTCACCATACTGGAGGCCAAAAACAACATGTCCCTGATCAGTTACTACAACCAGGCGTCTCCAGAGGTCCTTCCTTACATCTCCACCGATATTGCcggcctctcctcctccttctacCACATCTTCTGCTCCTGCAGCCAATACTTGACCAGGAACAGGCTGCAGCCCGCCCCCGaggtgaaaaccggccaatacCAGGCCACGAATACAGACATTCCCACCTGTCAGACTGAAGCTGACAGTCTGTCAGTGGCTCTCCACAGCACCCCCCTGTAGACGGCCAGTGGTACCTTCCGGGCCAGTTTACGTAGCCAAGTGTTGAGTGAGCTCAAGCTTACATGGTACTATTAACACTGCCACAAGTGTTCAGTGAACAAAAGGTgatatttacataaaaacatttttaactaaGGTATTCAAATAGAGAATCTAAAGATCACAATAACAAACTATGCCTCACACACTTAATGTTCACTCTAATGTTCAACCAGTCTGATGTAAACCAgacctgatttaaaaaaaaggctcatttatttttcattgttttgacaCAAATTAAACATATTGTGTGTCACCGATGGTCAGAATTGTTTATTTTGCAAATCTATGGTAAATGGTCCTTTAAAGTACAAACACTAACAGGGGCATTAAGTGGTAAGAGACTTGTCTCCATTTGTTGACTGCAAATCACACAATGTAACATCTGTCTTTTGATAAAAAACATTGATGCTTCATTAAGTGCTTTCATaggatttttaataaaaatgtttttaacagaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152309 lncRNA downstream 199513 8510833 ~ 8537144 (-) False G112988
TU152310 lncRNA downstream 219901 8510833 ~ 8516756 (-) True G112988
TU152308 lncRNA downstream 226280 8508598 ~ 8510377 (-) True G112987
TU152307 lncRNA downstream 229191 8507228 ~ 8507466 (-) True G112986
TU152305 lncRNA downstream 238682 8497733 ~ 8497975 (-) True G112984
TU152488 lncRNA upstream 62282 8826367 ~ 8827444 (-) True G113106
TU152506 lncRNA upstream 106615 8870700 ~ 8870923 (-) True G113118
TU152518 lncRNA upstream 179400 8943485 ~ 8943752 (-) True G113129
TU152561 lncRNA upstream 207523 8971608 ~ 8973660 (-) True G113168
TU152589 lncRNA upstream 296810 9060895 ~ 9063239 (-) True G113194
XM_039816552.1 mRNA downstream 97483 8629489 ~ 8639174 (-) True LOC120568830
XM_039815918.1 mRNA downstream 345334 8380172 ~ 8391323 (-) True LOC120568405
XM_039816298.1 mRNA downstream 389393 8333508 ~ 8347264 (-) True exoc3
XM_039816299.1 mRNA downstream 390248 8333710 ~ 8346409 (-) False exoc3
XM_039816591.1 mRNA downstream 403818 8318547 ~ 8332839 (-) True LOC120568861
XM_039816747.1 mRNA upstream 1087 8765172 ~ 8779341 (-) True mrpl37
XM_039816140.1 mRNA upstream 65992 8830077 ~ 8861654 (-) True depdc5
XM_039814727.1 mRNA upstream 98986 8863071 ~ 8869794 (-) False rab36
XM_039814725.1 mRNA upstream 98986 8863071 ~ 8869239 (-) False rab36
XM_039814726.1 mRNA upstream 98986 8863071 ~ 8869239 (-) True rab36
unassigned_transcript_537 other downstream 249118 8487467 ~ 8487539 (-) True trnak-uuu_16
unassigned_transcript_534 other downstream 2508873 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 2509911 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 2515560 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 2516123 6220453 ~ 6220534 (-) True trnas-uga_17
TU152428 other upstream 16367 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 108349 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 109325 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 127846 8891931 ~ 8892004 (-) True trnan-guu_6
unassigned_transcript_549 other upstream 130965 8895050 ~ 8895123 (-) True trnan-guu_8

Expression Profile