RNA id: XM_039816945.1


Basic Information

Item Value
RNA id XM_039816945.1
length 1278
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120569088
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24083696 ~ 24089942 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACCTCTGACTTCAGGTGCTTGTTTGGTTTAACTCATTTCCTGGAGCAGGACCTAGTTAGGCTGGATCTGTGAGGGAGAGCCATAGAATAAAATAGGGATGTGCCAGCTATAtgttaaccaatcagaagcgaGACGGATGTacatttaaacaaaagtttgtCAAAGCGAAACAGTCCGAGGAAGTGCGCAGTAGCCTACAAGGAGAGAAGTGAAAGTTTTGGTTCTTGGATGTATCATTAGTGCGCAGGTTACGCTTAAATCGCTATGGCTTAACACTATCCTTGCTATTTATATCTCTTGAGACTTTTGTCCTTCCTTGACGGTTGAACATTGTTCGGTTTTAAGTCGACAACAAGTGACGCTTAAAATGCATTTTCTTGGCATTTTTGGGCTGATTTTATGGGACCTATCACTGGGGTGTCCTGTTCCAATAGATACCATCATAGTGCAGGTCCAGCAGTGGGGAGTGGTGGGTGCTCAGCAGGTCGTGGAGCAGGTCCTTCTCAATGGAGTCTCTCTTACTGGCAAAAACCAGGAAGTTGACAGCATTATCCAAACCATGTCAGCTGATGCACAACTTCCAACTCTTATCGGTGTCAACCAGACTTCAGTCCTAAGAAACCACACTGTCCTTCGTTCTCGTGAATGCATATTGGAGGGGTCTCAACTGCACTGGACAGACCGTGTGTTCTATGATGGGAAGGTCTATCTGACTCTGGACCACTCTGACACGTGGACAGCCCACGTACCGGAAGCACTGGCCTTAAAAGTGCTGTGGGACCAGGAAGAGCAGCGCATAAAGACAGCAAGGACCCCCCTTCAGGAGGGTTGCATCAAGCTGATGAGAGAACTTGTACTttctgtggagcagtcagTTCCAGGAATTCCTTCGCCTCAGTTTCTGATCCCAATCTTGGTGCTCCTGGCGTTTACAGGACTTATCGTAAtcagcctcctcctcttcaAAAACCAGGGTTTGAGACACCCTGGAGgtgttgttGGCTCGATTATACATTACCCTAAAGACATGACTGAAACAGCTCCAGACATTAAAGCCAGTGGTTACCGTACCTTGTAATTCAAAGCACCAGCTGATGAGCAGGGTCACATTTGAGCTTTCTACTTCAATTTTACTGTTGAATGTCCACTTACTGATTTAACACTTGGACAGTATTGCTCCATGACTGTAACCAAAACCTTTGCTAAAGTACCAACAGCCCACTGTCTGAAACTCATATGGTTATTTTGTGCACTTTAATATATgtatcacacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158223 lncRNA upstream 8381 24073887 ~ 24075315 (+) True G117389
TU158225 lncRNA upstream 8582 23999854 ~ 24075114 (+) False G117389
TU158250 lncRNA upstream 39212 24043969 ~ 24044484 (+) True G117406
TU158244 lncRNA upstream 40155 24036655 ~ 24043541 (+) True G117405
TU158246 lncRNA upstream 40155 24036891 ~ 24043541 (+) False G117405
TU158338 lncRNA downstream 60516 24150458 ~ 24150771 (+) True G117476
TU158349 lncRNA downstream 74912 24164854 ~ 24169555 (+) True G117487
TU158350 lncRNA downstream 79726 24169668 ~ 24169953 (+) True G117488
TU158403 lncRNA downstream 167612 24257554 ~ 24258831 (+) True G117523
XR_005640665.1 lncRNA downstream 247751 24337693 ~ 24339256 (+) True LOC120568139
XM_039816224.1 mRNA upstream 26621 24054779 ~ 24057075 (+) True LOC120568612
XM_039816993.1 mRNA upstream 28992 24052352 ~ 24054704 (+) True LOC120569114
XM_039815139.1 mRNA upstream 78685 23968169 ~ 24005011 (+) False clcn2a
XM_039815960.1 mRNA downstream 48213 24138155 ~ 24142097 (+) False cdc20
XM_039815959.1 mRNA downstream 48224 24138166 ~ 24142097 (+) True cdc20
XM_039815961.1 mRNA downstream 48224 24138166 ~ 24142097 (+) False cdc20
XM_039816710.1 mRNA downstream 62218 24152160 ~ 24160339 (+) True bokb
XM_039816226.1 mRNA downstream 81103 24171045 ~ 24197651 (+) True kif1ab
XR_005640839.1 other upstream 28992 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 28992 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 60037 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 169198 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 175295 23905870 ~ 23908401 (+) True G117353
TU158470 other downstream 577951 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 583982 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 860626 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1665151 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1685949 25775891 ~ 25793954 (+) False LOC120568895

Expression Profile