RNA id: XM_039816961.1


Basic Information

Item Value
RNA id XM_039816961.1
length 3361
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC120569097
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14817259 ~ 14829753 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAAGTCACAGTAGATGTGGAATATTCCCACAGACAGATGGTTTCATAATAACGAGAGAAGAACTTGCAAAAGTGTGCGGCTCCTTGAAAAGAGAAGGTCATGAAGGTTCAACAGATCTCACACCATGTTGTCTTTATCCTGCTGGCTGCTGCTGTACGATCTCAAGTCAACCCAGAAATCTGTCGATATCCTCTCGGTATGACCAGTGGGCAGATTCAGGACGAGGACATCTCTGCCTCCAGTCAGTGGTCTGAGTCAACTGCTGCAAGATTTGGCAGACTTGACTTAGACAACGGAGACGGTGACGGGGCCTGGTGTCCTGACATCATGTCAGAGCCGGACGGCCTCAAAGAGTATCTCCAGGTGGACCTGCGTTCACTACACTTCATCACGCTGGTGGGCACCCAAGGTCGCCACGCCGACGGCATGGGTAATGAGTTTGCCCAGCGATACAGGATCATGTACAGCCGCGACGGCAGCGAGTGGGTGGGCTGGCATGATAGGAAGGGAAGGCAGGTCATTGAGGGGAACAGGAATGCGTATGATGTGGTGCTAAAGGATCTGGAGCCTCCCATCATAGCTCGTTTTGTCCGCTTTATGCCTGTGACAGACCACTCCATGATCGTGTGTATGAGAGTGGAGCTCTACGGCTGTGAATGGCTGGATGGCCTGATGTCTTATAGCATTCCAGATGGGCACCAAATGATCTACAGAGGCCTGGATGTCTACTTTAATGACTCTGTGTATGATGGAGCATCAGCTGATAGACTGACAAAGGGCCTCGGTCAGCTGACGGATGGCACCTGGGGTCTGGATGATTTTCTCCACAGCCACATATACGCCATGTGGCCAGGGTACGACTACGTGGGCTGGAACAACAAGAGCCTCCCCAAAGGTTACGTGGAGATGATTTTTGAGTTTGATCACGTCCGAAACTTCACATCCATGAAGGTTCACTGTAATAACATGTTTAGCCGAGGGGTGAGGATGTTCAGACAGGCCACCTGTTACTTCCGGTCAGGATCAGACTGGGAGGCTGACCCGGTGACATTCAGGCCCACTGTCGACCGCACGAGCCAAAGCGCCCGTTTTGTCACTGTGTCCCTCGGGGACCGCACAGCCAGCGCCATCAAATGCCGTTTCCACTTCAGTGATGTTTGGATGCTCTTCAGTGAGGTGGCCTTCCAGTCAGGCTCAGCAGTGTACAACACATCTCCGACTGCTACCAAACACCCCACAAACACACCGCCAGCTCTCATCTGGCTAGGAGATGATCCTACTCATAAATTGGATGACAGCAATACCAGGATCCTGATTGGCTGCTTGGTGGCTATCATCGCCATCTTATTGGCTATCATAGTCATCACCCTGTGGAGGCAGGTCTGGCAAAAGATGCTTGAGAAGGCATCCCGCCGCCTGCTGGATGATGAACTCACAGCTCGTCTTGCGGTCCAGACCCAGGCCTTCTCCTCCCACCACTCCTCTCTGTCCAGCGAGAGTGGCTTCACCTCCAACTTCACCTATGAGAGAATCTTCCCCCTCTGCTCCGACTACCAGGAGCCTTCCCGCCTTATCCGGAAACTACCCGAGTTTGCTCAGTCCACTGAACACCTCGGACCGAGCACCTCCTGTAGAGCCCTCGCAGCCAGTGGTGCAGACGGTGCCCCCCACTATGCGGAGGCAGACATCATCAGCCTCCAGGAGTCTTCAGACAGCAGCACCTACTCCATCACAGCTGTCGACATGACTCTTTTTGCTGGCACAGATTCATCCATGAGAGAGTTCCCCAGACACAAGCTCACGTTCAAGGAGAAACTGGGAGAGGGCCAGTTTGGAGAAGTGCACTTGTGTGAGGCAGAGGGCATGCAGGACTTTTTGGATGAGGATTTGTCTATAGAGGGAAACGATGAGTCACCCCTGCTGGTTGCTGTGAAAACACTGCGGGAAGATGCCAACAAGAATGCAAGGAATGACTTCCTGAAGGAGATCCGAATCATGTCTCGCCTGAGGGACCCCAACATTGTTCGTCTGCTGGCGGTGTGTGTGGACACAGACCCACTGTGTATGATCACTGAGTACATGGAAAATGGAGACCTGAACCAGTTCCTCTGCAATCTCAGACTGAAAGAGGCTGCTGATGAAGACAAGACAGAACAAGAGGAAAAAGAGGGGGAGAGTATGGTCAGTTATAGTAAACTCATTGGCATGGCTGTGCAGATTGCATCTGGAATGAAGTACTTGTCCTCTCTCAACTTTGTCCACCGTGATCTGGCGACACGCAACTGCCTGGTGGGTAAGAACTACACCATAAAGATAGCTGATTTTGGCATGAGTCGGAACCTGTATAGAGGGGACTACTACAGGATCCAGGGCCGGGCCGTCCTGCCCATTCGCTGGATGTCCTGGGAGAGCATCCTACTGGGTAAATTCACCATGGCCAGTGACGTGTGGGCATTTGGTGTGACTCTGTGGGAGATTCTGACTCTGTGTAAGAAGCAGCCCTACTCCCAGCTCTCTGACGAGCAGGTCATTGAAAACACCGGCGAGTACTTCAGGGACCAGGGCAAGCAGGTGTACCTGCCAAAGCCTCCCTGTTGTCCTGACAGAGTCTACAATGATCTCATGCTGAGCTGCTGGAGGAGGAACGCCAAGCAGAGGCCGAGCTTTCAAGAGATACACACTCAGCTGATGGAGAGCCTGGCGTAACAAATGGAACAGATCATTTCTCTTTGCCATGCACTGTCACTGTACATGTCACATTTGCTCCCTTCAGTCTGGATATATTTGGGATCAATTTGAAATCAGAAACAACCCATCAAAtgtaaccatttgtttttagcTGACGTGCCACAATGGTGCTGTAAATAATAAGATATGAGGAGAAGGTATACACTTGAAAAGTGCcttgtgttttatatatacaAATTAGCACTGTTCACCCAGTGAATTCACTCctttgtgtatttattaatttctttttatttcctaTGCTATGTCTATTTATAGAGTACTCTATGGTAATCCtagatttaaaaacacaattgtgATTTTTCTTTCAATTTATTTTCCATACATACATCTAATTCTACTGCACATTTATTAGAAGATGTCTATACAAATGTGTGACCTTTTatgaatgtttatatttttgctttttaagGGGGAACAAATGGCATGATAATGACTGTTGTCTAGATGAGACAGGTGTTTTTACGCTGCAGCAGTTCACTGACATGTTTTATAAACATGTTTACGTCCTTTTGCAGAAATATGCATGTGTATATTGTTGAACAGTAGCCTAGTAAAGAACAAACCAAGTCAAACGAAAGATCCATGGAAATAAAGATAATTAATATTTA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
K05125 DDR2, TKT, CD167b; discoidin domain receptor family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640836.1 lncRNA downstream 34787 14780276 ~ 14782472 (-) True LOC120569096
TU154667 lncRNA downstream 65731 14751245 ~ 14751528 (-) True G114661
TU154623 lncRNA downstream 123302 14693632 ~ 14693957 (-) True G114636
TU154619 lncRNA downstream 127193 14689457 ~ 14690066 (-) True G114633
XR_005640749.1 lncRNA downstream 199035 14614432 ~ 14618224 (-) False LOC120568687
XR_005640751.1 lncRNA upstream 124825 14954578 ~ 14958403 (-) True LOC120568695
TU154756 lncRNA upstream 171391 15001144 ~ 15003045 (-) True G114733
TU154790 lncRNA upstream 246388 15076141 ~ 15081980 (-) True G114752
TU154900 lncRNA upstream 434767 15264520 ~ 15266224 (-) True G114836
XR_005640790.1 lncRNA upstream 557725 15387478 ~ 15393259 (-) True LOC120568803
XM_039816968.1 mRNA downstream 663 14811662 ~ 14816596 (-) True LOC120569101
XM_039816966.1 mRNA downstream 7635 14798114 ~ 14809624 (-) False serbp1b
XM_039814532.1 mRNA upstream 5331 14835084 ~ 14849810 (-) True LOC120567619
XM_039814711.1 mRNA upstream 32778 14862531 ~ 14863690 (-) True rgs5b
XM_039816377.1 mRNA upstream 65419 14895172 ~ 14917431 (-) True LOC120568704
XM_039816378.1 mRNA upstream 65419 14895172 ~ 14916595 (-) False LOC120568704
XM_039815948.1 mRNA upstream 210092 15039845 ~ 15044653 (-) True LOC120568424
TU154687 other downstream 20215 14795918 ~ 14797044 (-) True G114680
TU154602 other downstream 201487 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 1728696 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 2048634 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 2214350 12601180 ~ 12602909 (-) False nedd8l
XR_005640598.1 other upstream 460433 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 460433 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 581409 15411162 ~ 15411347 (-) True LOC120569139
XR_005640843.1 other upstream 581910 15411663 ~ 15411840 (-) True LOC120569141
XR_005640844.1 other upstream 582640 15412393 ~ 15412467 (-) True LOC120569142

Expression Profile