RNA id: XM_039816977.1


Basic Information

Item Value
RNA id XM_039816977.1
length 2549
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC120569106
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18300412 ~ 18306617 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcacagagagagagagagagagagagagagagagagagaaaaagcctgcagcagcagcaaatgAGACAGAACAACGAGGCGGGAGAggtagaaagagagacagagagggagggaggtggaGAGGGGCCCTGTGTAGGAGAGAGGGCTACAGGGTGAGGAAGAAGGAGTAGAGAAAAAGTTAGgagaagtaggagaaaaaaggTCCAGGGAGAGAAAAGAACGGGTGCAGAGATTAACAACTACAGGAGAGAAGAAGGGAAACAACAGACAGGAAGGAAGGGGAGGGAGAAGTCCTGggtagagagggagaaaaaaaaagagctgaagAAAAGTTTTCTTGTGGGAAGACGCAGATGAGGAAAACAGAGCGAGTGAATGACTGGGCTAGAGGGAGCAGAGAGGGGAGGAAACCAATTGTTTTCTAAGGCGTTTTCCACACTCTTGActtctttggacatgtacacAGAAGGTGCACAAACAACGGGACACCACCGATTTATTCAGCACATCAACACCACCAACCCCTGCTCCTGCCAGCACTGCGTCCACTATGAGCAGCCAGCGTACAGCCATCACGGTGGGCCGGGACACCAACCAGCATCAGCCAAACAGACAGACCACCCATCCCTGGACTGCAGGAGAGACACCCAGGCTCCTCGGGTTAAAGACGTAGGAGGGAGAGCTTTCATAGTGGACAGAGCTGAGAGAAGCGGTCATCGCAGCCCACAGAGGAGGCCTGTGTTCGCAGGGCCAGGCCTTTACAGCCAGTCAGATGACTTGAGCCAAGTTTACCCCTGGGAGTTGAACCCTGCCCAGTGGAGCTACCCGCTGGAGCCTGGGGTGAGACACTACCCGTCTGTCAGAGAACAGTGTGGCTGTGTGGTGCGCAGCGACACCAGGGCACACCTCTTTAGCGCCGGGATACCACATCCTCTCCCCCATCttcaggtcaaaggtcaagggTACAGGCACAGGAGGACGGTCAGGTATGTCTCcgtggatgaggaggaggaaagttGTAGATGCACCTCTGAGAACTATCATGCGGAGCAACACAATCCTCATCTGGGTCATTTACACATGCCAAATGGCCACTGTGGACCAAGGCCTGTGTTCTTTCAGGGAGGGGAGGAAAGAGATAGCCATCAGGACCGGGGAAGTCTGAAGGCTGGATCAGAGGAGGGCTGTAATGGACGCAGTGGCTCTCACAAAGGTTTCTTCTCTACTGAAGTCCCACAAAAACACTTGAACCAAAGCCGACAGAAGGGTGTCTGCTTCCCTCCATCTGGCATCACCAGTCCAGAGCCCTCAAAATCGACAACCAACAGCGACCACCAGCACCAGGGTTCAGAGGTGGTGAAGCAGAAGAGGAGGCAGGATTCGGTGAGGGATCAAATCAGACAAGTGGTGACAGATCTGGAGGATGTGTTGGGGGGTTTGAAGCAAGTTCACGTGGAGATGAAAGAGGTGGTCCAGCAGATTGATCGTCTCACAGCCACAATCGACCTCAGCGCGGAGGTGCCCTGCATCACTCAGGGCTCGTCCAGTAACTTTCATGGTTCAACTCATCCAGGTGACCTCAGGCTGGCACCGCTGCCCAATCACAAGCCTGCTCCAGTCCCGGCTTTGCAACACATCGACAAAGAACGCATCATCTTAAGAACTAACTCTCCCTCCCCTGTTCACTTGGCATCGGTCGTCAAAACCAGCCGCTTCACCCCACCCAGCCACAGTAAGGATATCAACCACGAAAGGCCAGGTATAAATGGCCACCCGCCTCACCTCTATCCCCCCAGAGACACCAACCACGTTGGCCAAACTCATCCCGAGCCCCACCCACAGAGCCTAGACCCTAAGGTCATTATTGGTAACAGCACCTCCAGTTCAAAGACTCAGAAGCCTCCTCTGTACCCTCAAAACGGACGCTGTGGGAAGGGCCCATACCCGCCTCCCAAGCCTGTGAGGACCTCTGCCTACCCGGGGAGAGGCTGCCAGAGCACCAGTATGGTGTGAAAGAGGGGGGTGGTCTGCCCCAGTGCCATGGGGGCCTGAAACATGAGACCCTGCTGCAGTAAGTGGAGGTCAGAGTGGGACCAGGCAGGGGAACAACTCATGCAGGAGCTGATGACACAGAGACAAGCTGTCAGTTGGTGGAAACAGAATACGGCCTGAAGGTGGGGATATTTCCAAAGGGAAAACTATCCCCCAAGAGTCAACCTACAACTGTATGTCACGCGAGCACAGAAGCATGGCGGAGTGGCAGTCAAACCTCTCTGAGAATTTATTCTTTTACTGTTTCTGGTGAGGTAGTGGCAAATAATGATAAGGATAAACTGTGAACTGCTGCTCAACAACCATTAATAGAAAGGTATCTTTTAATGACagtgttaatttattttatactaTTTTATATTGCAAATAAAATCGATTTTCAGGCAGCTTACACCAGTCTGAATACTACCTAACCTGACAAAGCATGATTTCAGACTTTTACAAATCTGCATCATGATGTAGTTATTTTGGCAAATAAACAAATGATCCCAATATGA

Function

GO: NA

KEGG:

id description
ko04350 TGF-beta signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156057 lncRNA downstream 4624 18295562 ~ 18295788 (-) True G115722
XR_005640696.1 lncRNA downstream 14357 18270334 ~ 18286055 (-) True LOC120568297
TU156041 lncRNA downstream 40128 18259924 ~ 18260284 (-) True G115710
TU156018 lncRNA downstream 65897 18232868 ~ 18234515 (-) True G115691
TU155965 lncRNA downstream 216568 18081198 ~ 18083844 (-) True G115644
TU156082 lncRNA upstream 71783 18378400 ~ 18385959 (-) True G115738
TU156134 lncRNA upstream 147416 18454033 ~ 18456002 (-) True G115782
XR_005640793.1 lncRNA upstream 228030 18534647 ~ 18535613 (-) True LOC120568822
TU156215 lncRNA upstream 308184 18614801 ~ 18615272 (-) True G115848
TU156218 lncRNA upstream 314216 18620833 ~ 18621220 (-) True G115851
XM_039815702.1 mRNA downstream 56154 18236790 ~ 18244258 (-) True LOC120568294
XM_039815691.1 mRNA downstream 125086 18171649 ~ 18175326 (-) True LOC120568289
XM_039815683.1 mRNA downstream 129923 18151116 ~ 18170489 (-) True LOC120568287
XM_039814932.1 mRNA upstream 174053 18480670 ~ 18494488 (-) True sppl2
XM_039814933.1 mRNA upstream 176523 18483140 ~ 18494488 (-) False sppl2
XM_039817002.1 mRNA upstream 201838 18508455 ~ 18521023 (-) False phc3
XM_039817001.1 mRNA upstream 201838 18508455 ~ 18520064 (-) False phc3
XM_039817004.1 mRNA upstream 201838 18508455 ~ 18520064 (-) False phc3
TU155671 other downstream 1191508 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1255350 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 1258936 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1498148 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 1660600 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 176539 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 410265 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 538288 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 625357 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 915174 19221791 ~ 19222726 (-) True G116084

Expression Profile