RNA id: XM_039816986.1



Basic Information


Item Value
RNA id XM_039816986.1
length 880
RNA type mRNA
GC content 0.46
exon number 6
gene id myl13
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20920596 ~ 20923664 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTGGCCAGTGGATAAAAGGGCCTAACCTTTACTGGGCCACATCCAACCGCAGTGTGCTGGatccctctgtgtctgtgtcggtCCTATACTTTGTCTCCTGAAAGCTTCTGGCGATGGCCCCAAAGAAGAAGGAAGAGCCAAAACCTGCAGCAGCACCAGCACCTAAGCCGCCAGAGCCAGAGCGCCCTAAGACCCCAGAGTTTGACCCTGCAACAGTAAcgCTGGAATTCACCCCCGAGCAAATTGAGGACTTCAAAGATTCCTTCCAGCTGTTTGACAGGACACCAGCCAATGAGATGAAAATCACTTACGCCCAGTGTGGTGACCTGATTAGGGCTTTGGGCCAGAATCCTACCAACATAGAGATCATGAATGTCCTTGGAAAGCCCAAGCCTGAAGACATGCAGACTAAGATGCTTGACTTTGATCAGTTTCTGCCCATGCTCCAACACATTTGCAAGGCCAAGGACCGTGGAACATATGAGGACTTTGTGGAGGGTCTGAGGGTATTTGACAAGGAGGGGAATGGCACAGTCATGGGAGCTGAGCTCAGGCATGTTCTAGCAACACTGGGTGAAAAGATGAATGAGGGCGAGGTGGAGCAGCTGATGCAAAACCAGGAGGATGCTAATGGATGCATCAATTATGAAGCTTTTGTAAAATACATTATGGCAACTTAAAAAGGGAAAGCAAGACCCTGAATTCTTGACAGTAAATCTGTTTCTGTAAATCCCATCTTGTATATTTTTCATTTCCATGCATCTCAGATGGATCTACAACTCATCCATATATCACCTTGTTTTTTTAAGACCGCTTGTGTTGATGCTGTGCACACATTGCACCATATCATAGATCATGGTAAATAAATACAATCATATTG

Function


GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157050 lncRNA downstream 880 20918969 ~ 20919716 (-) True G116525
TU157030 lncRNA downstream 92885 20827512 ~ 20827711 (-) True G116508
TU157021 lncRNA downstream 113905 20806153 ~ 20806691 (-) True G116499
TU157004 lncRNA downstream 149568 20768635 ~ 20771028 (-) True G116484
XR_005640772.1 lncRNA downstream 334919 20580520 ~ 20585677 (-) True LOC120568747
TU157105 lncRNA upstream 64660 20988324 ~ 20995540 (-) True tmie
TU157133 lncRNA upstream 134928 21058592 ~ 21061240 (-) True G116580
TU157135 lncRNA upstream 183850 21107514 ~ 21107718 (-) True G116582
TU157207 lncRNA upstream 285078 21208742 ~ 21209773 (-) True G116651
TU157296 lncRNA upstream 373751 21297415 ~ 21300082 (-) True G116692
XM_039816821.1 mRNA downstream 102432 20815649 ~ 20818164 (-) True LOC120569019
XM_039814886.1 mRNA downstream 121051 20792744 ~ 20799545 (-) True thoc1
XM_039816200.1 mRNA downstream 180567 20693367 ~ 20740029 (-) False greb1l
XM_039816213.1 mRNA upstream 61137 20984801 ~ 20995567 (-) False tmie
XM_039814544.1 mRNA upstream 78316 21001980 ~ 21006127 (-) True ccdc13
XM_039814543.1 mRNA upstream 78547 21002211 ~ 21006127 (-) False ccdc13
XM_039814556.1 mRNA upstream 84384 21008048 ~ 21010576 (-) True higd1a
XM_039814547.1 mRNA upstream 127675 21051339 ~ 21053776 (-) True jmjd4
TU156767 other downstream 1124887 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 1455216 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 1697870 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 1985119 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 2074319 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 84385 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 1338334 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 1339459 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 2506702 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 2544956 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile