RNA id: XM_039816992.1


Basic Information

Item Value
RNA id XM_039816992.1
length 2513
RNA type mRNA
GC content 0.50
exon number 17
gene id tfa
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24036894 ~ 24044424 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttttccctcttccaGCTCTGTCCGAGGTTTGCTATAAAAAGCCTGAGCTGCCTGCCGGACACTCTGTTCTGCTGACCTGGAGACCCCGCCGTCCAACATGCAGACTCTCCTCCTTGTTGCGCTGCTCGGATGCCTCGCCGCCGTGTTCGCGGCCCCAGCTGACAGGGTGAGATGGTGCGTCAAGTCGGACAAAGAACATGAGAAATGTGTGGCCCTTGCAGCCAAAGCTCCTGCCTTCTCCTGCGTGAAGAAATCCAACACCATCGACTGCATCGTTGCAATCAAGGCTGGTGAGGCAGATGCCATCACTTTGGATGGAGGGGACATCTACGTTGCTGGACTTAAGAACTACGACCTGCAGCCCATTATTGCAGAGGACTACGGCACCTCTTCGGAAACCTGTTACTACGCTGTTGCTGTGGTGAAGAAGGGCACTGACTTTACCTTTGACCAGCTCGGGGGGAAGAAATCCTGCCACACTGGGTTGGGGAAATCTGCAGGCTGGAACATCCCTGTAGGAACTTTGGTGTCTAGGAATTTGATTCAGTGGGCAGGCATTGAAGACAAACCTGTGGAGGAGGCGGTGAGCGAGTTCTTTTCGGCCAGCTGTGTCCCGGGGGCAACAAGGGGCAGCAAACTGTGTTCGCTGTGCAGAGGAGACTGCTCCAGGTCTCACAATGAGCCTTACTACGACTACGCCGGAGCCTTCCAGTGTCTAAAGGACGGCGCTGGAGATGTGGCTTTTGTGAAACATCTTACTGTACCTGACTCTGAAAAGAACAACTACGAGCTGCTGTGCAAGGATAACACCAGAGCGCCTATCGACAATTATCAAAGATGCCACCTGGCCAGAGTACCAGCTCATGCTGTTGTCACCCGCAAGGACCCACAGCTGGCTCAATTAATCTGGAATAACCTCAATTCAATACAGTCTCTTTCAGACTTTAACCTCTTCTCCTCTGAAGCCTATGCACCTGCCAAAAATCTGATGTTCAAGGACTCAACACAGAAGCTGGTGCAGGTGCCCGCAAACACAGATTCCTTCCTGTATTTGGGTGCTGAATACATGAGCATTGTCCGTTCCCCTTAAGaatgtaaaagtaatCCGACAGGCACTACATCCACTGCCATTAGATGGTGTGCTGTGGGCCACGCTGAGACGACCAAGTGTGACAGTTGGAGCATCAACAGTGTGGGGTTTGACACCACCGCCATTGAATGCGCAAGGGGAGCCACAGTTGATGAGTGCCTGAAAATGATTATGAGTAAAGAGGCTGACGCAATGGCAGTGGATGGAGGACAGGTGTACACAGCAGGAAAGTGTGGTCTGGTTCCTGCTATGGTGGAGCAGTATGATAACGATCTGTGCAGCACCCCTGGAGCCACAACTTCGTCTTACTTTGCTGTTGCTGTGATAAAGAAGGATTCAGGGGTGACCTGGGAAAACCTGAAGGGCAAGAGGTCTTGCCATACGGGCGTCGGCAGAACTGCTGGCTGGAACATCCCTATGGGTCTGATCCACCAACACACTCAGGACTGTGACTTCAcCCAGTTCTTCAGTAGCGGCTGTGCCCCCGGAGCAAACATCACGTCTCCATTCTGTACTAATTGTCGTGGCAGTGGCAAAGCTGTGGGAGATGAGTATAAGTGCAAAGCGAGTTCTGAAGAGCAGTTCTACGGCTATGCTGGAGCCTTTAGATGTCTGGTTGAGGATGCCGGCGATGTTGCCTTCATCAAACACACAATCGTTTCAGAAAACAGTGATGGCAATAATGTAGCGCCATGGGCTAGTGGTGTGAACTCTGCTGACTACCGGCTGATCTGCCCTGGGAAGAATCCAGTGCCAGTCACTGATTACGCCTCTTGTCATCTGGCTGTCGTGCCCGCCCACGCTGTGGTGACTCGTCCAGAGACCCGAAACGAGGTTGTTAACGTTCTCCGGGATCAGCAGgCCAAGTTTGGTAGCAGTGTCAGTGATGCCACATTCAGGATGTTCCAGTCAGAGTCAGGAAAGAACCTCCTCTTCAAGGACTCTACTAAGTGTCTCCAGGAGGTTCCAGCTGGAAAAACATATGCAGAGTTTTTGGGAGAACAGTACATGATTTCCATAAATTCACTCAGAAAGTGCAGTGAAACCACTCCAGATCTGGAGAAATCTTGCACTTTCCATTCCTGCCAGCAAAAAAACTAGTGGAAACCATAGACCATGCTGTAACTCATTCAGCCCTCAGCAATTCGAGCACCATACCCACTCTTCTCACACTCAACCCAAAAATTGCATTGTGTATTTTCTTACTGATTGTGTTGTAGACTGTTTTTAGAAGTACAACCAACAATTGGATACATTGCACTACCGCAACTTATAAAACAACTATCCTGTGATCAATCATGTCCACATGTAGCCATTTTCATGCAGATGAAACCTAATGTTTCATTACCTGTGTTATTGCATCAGCTATGTTTCGTCAACACGTGCCTGACTTTTCTCAAATAAAGCCTTTTTAATGCTC

Function

GO: NA

KEGG:

id description
K14736 TF; transferrin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158201 lncRNA downstream 96100 23940225 ~ 23940794 (-) True G117372
TU158197 lncRNA downstream 98787 23934919 ~ 23938107 (-) True G117369
TU158158 lncRNA downstream 139983 23895975 ~ 23896911 (-) True G117343
TU158157 lncRNA downstream 141124 23895519 ~ 23895770 (-) True G117342
TU158156 lncRNA downstream 141793 23894159 ~ 23895101 (-) True G117341
TU158367 lncRNA upstream 150883 24195307 ~ 24199562 (-) True G117501
TU158374 lncRNA upstream 165125 24209549 ~ 24212225 (-) True G117505
TU158376 lncRNA upstream 169413 24213837 ~ 24216457 (-) True G117507
TU158388 lncRNA upstream 196197 24240621 ~ 24242247 (-) True G117514
TU158437 lncRNA upstream 294658 24339082 ~ 24462553 (-) True G117553
XM_039816991.1 mRNA downstream 1373 24013677 ~ 24035521 (-) False eif4g1a
XM_039816990.1 mRNA downstream 1373 24013677 ~ 24035521 (-) False eif4g1a
XM_039816988.1 mRNA downstream 1373 24013677 ~ 24035521 (-) False eif4g1a
XM_039816989.1 mRNA downstream 1373 24013677 ~ 24035521 (-) False eif4g1a
XM_039816987.1 mRNA downstream 1373 24013677 ~ 24035521 (-) True eif4g1a
XM_039815737.1 mRNA upstream 18733 24063157 ~ 24071794 (-) True ubxn7
XM_039815738.1 mRNA upstream 28297 24072721 ~ 24081240 (-) True ppp1r7
XM_039815962.1 mRNA upstream 97892 24142316 ~ 24147110 (-) True elovl1a
XM_039815120.1 mRNA upstream 116439 24160863 ~ 24164722 (-) True thap4
XM_039815119.1 mRNA upstream 120417 24164841 ~ 24168643 (-) True agxtb
XR_005640841.1 other downstream 15393 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 16456 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 167668 23869155 ~ 23869226 (-) True trnap-agg_8
unassigned_transcript_560 other downstream 168869 23867952 ~ 23868025 (-) True trnai-aau_23
XR_005640657.1 other downstream 545282 23468620 ~ 23491612 (-) False LOC120568062
TU158445 other upstream 454956 24499380 ~ 24536496 (-) True G117560
TU158687 other upstream 877779 24922203 ~ 24923318 (-) True G117732
TU159298 other upstream 2617197 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 2775414 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 3626552 27670976 ~ 27675360 (-) False LOC120568986

Expression Profile