RNA id: XM_039817002.1


Basic Information

Item Value
RNA id XM_039817002.1
length 3363
RNA type mRNA
GC content 0.53
exon number 15
gene id phc3
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18508455 ~ 18521023 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACGTGTGTTTGCTGCAGAATTTTTCCCATTACTGAATCTGTGTGTGACCtgggagatggagagacaggGCCCAGGAGAAAAGCAGGCAGACACTAATAGGACTGTAGCCACCACCACCCCCAACACATCAGCTGccgtcaccatggcaacagtcAACTCCGGCAGCACCACGTGCACCCAGGCACCCTCTACTTCCCTCAGCATCATCTCACCCGACAGACAGGCAGTCCAGGTGATCCAGCACGCCATCCACAGACCTCAGAGCATGGCGGCCCAGTACCTGCACCAGATGTACGCagcccagcagcagcaccagctCATGCTGCAGACAGCCGCCCTGCAGCAGCACCAGCACAACCCTCATCTGCAGAGTCTGGCCACCATACAGAAGGCTTCAGTCTGTCAGCGGCAGTCACCTTCGTCATCCAGTGGCAGTTTGGTTCATCAGCCTGCTGGTGTTTCCCAAAACTCAATTACTTTGCCAGCATCTCCAGTGACAGCTCACCTGATTGGCCGAACCCAAACATCCACTGGTGCTGCAACTACCATATCCCAGCAGGCCATGCTCCTGGGAAACAGACCGGCCAACTGTAACCAAGCTCAGATGTACCTTCGCACTCAGATGCTTATTCTAACCCCTGCAGCCACGGTGGCTGCAGTTCAATCAGAGCTCCCTGCGGTCACCTCCTGCTCCTCTTTACCTACCTCCTCTCAGGTGCAGAATCTCGCTCTACGTGCCCGCTTGCCTAGATCTTTGGCCACAGCCCACAGTGTGATTTTAAAGCCATCTGCCCAGCCGCAAGCCCTGACTCCGGCCACCTCTTTATCCAAGACATCAATCTGCGGGCTGAAAACCAGCCGAAACCAGCTGACTGACACCTCAACAGAAACAGGACCAGCGGATGTCACCCGGCTGGCCTCGGGGCCCCAGATTATAACCCCAGCCTACTCTCCGGTGCAGACCCACACTCTGGTCAAGCAGCAGCTGTCCTGTCTGCCAGGCCAGCGGGTGGCGCACCACCAGCTCATCCTCCAGCAGGCTACAGGAGGAgctccaaaccacagacagctCCAGCCCATCGCTCTCAGAGTAGCACCTCAAGAAACCAACTCCaaccctctttctctttcagttAAAAGACTGACCACCCCCAGCACCCAATCACAAACCAATAACAACCCCCAAggcccttcttcttcttctacgtCTGTCCCCAGCGTGTTTGCATCCTCAGCTCAGACCTCAATCCCAGCTGCCACCGTTCAGCCTCAGCCTCCTCCTCTGGTGGCCGCTCCGCAGCGCCGGACCTCATTCCCACAAGTGCAGAACCAgcctccaccacctcctccgCCTCTGGTTCTCCCCAGGCTGCCCCAGAACCCCCCAGCTTCCCTCCAGAGGCTGTCCCTGCACTCGGTCCAGGCTTTGGCTGTCCATTCGGGACATATGTTGCTGACAGAGCAGGAGCTGCCTGTAGCGGAGGCCCTGGTCCAGGTGCCCTACCAGAACCTCCCACCTCCTCAGACGGTGGCTGTTAATCTTAAAGTGCATCGAGTCAGACACAATGAAACTCCATCCTCGGAGCAAACATGCAAAGTGAATGGATTGAgctcagaggagaggaaagatgaATGTTCTCCCAGTCCACAGCGGGACAGGACCCTGACACCTCTCATTGGGCCTCCTAAGCAGAATGGTGCAGTGATGGGTTCATCCTCCATCATATCCAGTCGCCCAGTGATTAGgtcaccagtggtggaagaaccCTCCCAgctcaccaccaccagcagcaacCCTCCTCCTCTACCTCCTCTCGTCCTGCCAGCAGCAGTGAGAGGCCCCACCCAGCCCCCCTACTCCCCAACAAGCGTCCCAGAGAGCCCTGAAAGGATACTCACAACCCACGTCCTTACACACCTTATAGAGGGCTTCGTCATCCGAGAGGGCCTGGAGCCATTCCCGGTGGTCTCCTCTTCGCTGTTAGCAGACCAGCAGGCTTCACTGCCTGAATCCCAGGAGATACAAACCAACGGGGATTCAGCAGCAGAGGACAGTCCGCTGGATGCTGACCAGATGGATTCAACAGATTCAGAGATGGAATACGATGGCCCTGCAGCAGacgTTGCAGAGCTGGGCGAGAGTGCGGCAGGTGTGCTGCAGTGTGAGTTCTGTGGGAGCCGAGGTTACGCTCACACGTTCCTGCGCTCCAAACGCTTCTGCTCCATGACGTGTGTCAGAAGGTTTAGTGTGAGCCGCACCAAGCGTATCACTGTGCTGAGAGCAGGCCGCTGGGGTCACAGGCCCATGGGCAGGAGAGGACGACCCCCCAGCAGGAGAGTCAATGGAGCCTATAGAGAACATTTTCTGAGACAGGCACGTGGGTCGTTTGGCTCAGAAGAGAGCCGGCAAAGCTCACTGATagaggaggaagagcaggaggaagaagaggaggacgaGCCTCCCATTCCCATGACAACCAGGCTCCGTAAACAGgccgagagagagcgagagagggagagagagcaggagcAGAGGATGACAGAAACAATCAGTGTTTCTGACGGAGAAGACGACGTCGGTTGTCCGTCTCAGTGGAACGTAGAGCAAGTGTTTTCTTATATCAACTCCCTACCAGGTGGTCAGGATGTAGCCGAGGAGTTTCGCTCCCAGGAAATAGATGGACAGGCTCTGCTGCTTCTAACTGAGGAGCACATGGTCAGCACCATGAACCTTAAACTGGGGCCTGCACTGAAACTGTGTGCCCACATTAATTCTCTGAAAGATGCATAAACACATTAACATTCCTACTCTCCAAGAATAGATGTGTGTTGATCTGGACCaggatgaagaaaaaaaggatgGCGGTCTTTTTAACAAGGAACAACAAGGAAGCACTACCCATTTTTAACTTTTCCTAAGTTCAGACTtatacaaagacaaaaaaagacaaacgtTTCCTGAGACCACTGCCAAGGATTTCCTTCCCGAGTGAAGTCCACACACTGTTACAGCTGATTTGAACATAAAGATGAGCAGTTCTTTCTATCTCTTCTTGTCATCCAATTGTAGTGATTGTAGCAGTTTGGCTCCAGTTATCCATTTGTTTCAAAATGGTAAATCGAAAGTTCTTTGTATTATTtgtaaacaaagaaaacaacttTACCTTATTACACATAAAGTTAAAGGATGCTGCACAATCTCAAAGTTTACAAAACAGATTTACTATCTTACAGATGTAATTTGATACATTTATCATCAGCGAATTAATGACCTATGGAACCAAACTGATGAAAAGGTTGTtatctattatttatttattattgtcatAATTAATATCCAAATAAAATCATGAGAGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156134 lncRNA downstream 52453 18454033 ~ 18456002 (-) True G115782
TU156082 lncRNA downstream 122496 18378400 ~ 18385959 (-) True G115738
TU156057 lncRNA downstream 212667 18295562 ~ 18295788 (-) True G115722
XR_005640696.1 lncRNA downstream 222400 18270334 ~ 18286055 (-) True LOC120568297
TU156041 lncRNA downstream 248171 18259924 ~ 18260284 (-) True G115710
XR_005640793.1 lncRNA upstream 13624 18534647 ~ 18535613 (-) True LOC120568822
TU156215 lncRNA upstream 93778 18614801 ~ 18615272 (-) True G115848
TU156218 lncRNA upstream 99810 18620833 ~ 18621220 (-) True G115851
XR_005640750.1 lncRNA upstream 141818 18662841 ~ 18663776 (-) True LOC120568692
TU156242 lncRNA upstream 162583 18683606 ~ 18684244 (-) True G115867
XM_039814932.1 mRNA downstream 13967 18480670 ~ 18494488 (-) True sppl2
XM_039814933.1 mRNA downstream 13967 18483140 ~ 18494488 (-) False sppl2
XM_039816978.1 mRNA downstream 201838 18300412 ~ 18306617 (-) False LOC120569106
XM_039816977.1 mRNA downstream 201838 18300412 ~ 18306617 (-) True LOC120569106
XM_039815702.1 mRNA downstream 264197 18236790 ~ 18244258 (-) True LOC120568294
XM_039816415.1 mRNA upstream 82284 18603307 ~ 18604790 (-) True gpr160
XM_039815327.1 mRNA upstream 107951 18628974 ~ 18646415 (-) True sec62
XM_039814523.1 mRNA upstream 126058 18647081 ~ 18655196 (-) True samd7
XM_039816654.1 mRNA upstream 182041 18703064 ~ 18720415 (-) False LOC120568909
XM_039816656.1 mRNA upstream 182041 18703064 ~ 18720361 (-) False LOC120568909
XR_005640621.1 other downstream 13967 18483156 ~ 18494488 (-) False sppl2
TU155671 other downstream 1399551 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1463393 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 1466979 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1706191 16756331 ~ 16802264 (-) False epb41l3b
TU156258 other upstream 195859 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 323882 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 410951 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 700768 19221791 ~ 19222726 (-) True G116084
TU156578 other upstream 943677 19464700 ~ 19465380 (-) True G116138

Expression Profile