RNA id: XM_039817009.1


Basic Information

Item Value
RNA id XM_039817009.1
length 1876
RNA type mRNA
GC content 0.43
exon number 3
gene id tmem53
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11538054 ~ 11540262 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACCACATAAGAAGAAGAAGCGGGagtatgtgtatgtaatagTGCAGTGACCTGACAGCCCATCGACCTGTCTGCAGTGTGTAACGTATTTGCCACAATCTGGCGTTGCTAATTAAAGCGCTCTAGCTTCTCTATAACCCTTTTTTCCAACAGCCAAATGAACCGAACGTTAACGTTGGAGAACGACAGTTGATACTCTCGCGCACAGAAATGGCAGACGATGAAATAGACTACAATATCGTGTTTCCAGATGCGGGGACATCGGAGAGACACTGGCAGGGGACAAAGGAGCCAGTTGTGATTCTGTTGGGCTGGGCTGGTTGCAAAGACAAACACCTCTCCAAATACAGCTCCATCTACAATGAACAGGGATGTGTCACCATCCGCTACACCGCTCCCTTGAAGACAGTCTTCATCTCAGAGTCGTTTGGCTACAAGGAGCTGAGCAGTACGGCCCTTAAGTTGCTGGAGATTCTCTATGACTATGAGGTGGAGAACAGTCCTATTTTCTTTCACATATTCAGCAATGGTGGCTTCATGCTGTACCGTTACATTGCAGATTTGTTGCACAATGATAAACAGTTCAGTTCCTTGTGTGTGATTGGGGCCTTAGTGGACAGTGCCCCAGGTAGTGGGAACGTCCGCGGGGCCCTGCGTGCACTGGCGGCCACCCTGGGGCCCAAAATAACTCCTGTTTTAAGGTACGTCCTCTTGGCGCTATTCGCAGTGACTGTTTTCCTGTTGCGAGTCGTGCTGTACCCCTTGACCAAGTACATCCACAAGAACCACTATGACGCCGTGCAGGAGCGTCCGCCCGCCTGGCCTCATTTCTACCTGTACTCCCGAGCTGACCAGGTGATCAGGCACACAGACATCAAGGTCTTTGTGGAGACCCTGAAGCAGAAAGGCGTCCCGGTGGAcagttttgattttgtttccaGTCCCCACGTTGGTCATTTCCGGGACTTTCCTGAGCAGTATGCTCTGAAGTGCCGCAGTTTCCTGGTTGCTTGCATGAAGGACTTGGAAGGGAACGAGACAAAGAAGAGACAGAGGGTTCCGAATCAATGAAACGCGGAGAGAAGCTCACACGATTTTGCTAACCCTCTGTTAAGCTGTCTTGCGAAGAAAATCAGACCAAATCAGACCAACTTGGTTTTTCTCAGTGGTCTGAAAAATCAGTTAGAAAATGAGGCTGACATTTTTTTGCAGGACTGCTGGAATTTGAGCTGAACTAGTACAAGATCTCAATGCTTTTCTGTCCCAGTGCACATAATGGCAAAGTTCCACACATGTGGTCTAGGTGTACTAATCCATGTCTAGAAAACCAGCCATATGAAATACTGTAATTCATATACCCCTGAAGTGTGTGGCCTAACCCTGCCAACTCCAATGTTTTTGCAACAGTCATATACTATAtgtaaaaataacaatacaaacaacattggaaaataaatcctttaggataatttaaatatttaatattgaTGTGAAATGTGATGCATTGTACATTAGTAGTAGTGATTCTAAATCTGAGGCTGTATTGGATAATCATTTATATCTtctatttattacatttacaatgtATAGTTTTAATCTAACAATTTGTCATTAATATTAGATCACAAGGGCACTTAAAATAAAGGCGACAAAATTCAAAAaggaattaaaaaagaaatctcaaTTGTTGCCTtaatcagacttttttttttttggggggggggggtccataAATTGTAGAACACCCAGCCCTAATATGTGATACACAATTGATTTAGTTCAAGGAAAATGTGATTGACAATGAATGTATATGTCCAGAACAACTattgtgttctttttttacTGATGTGCCTTCAATAAAGTAGAATGCTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153155 lncRNA upstream 12804 11524978 ~ 11525250 (+) True G113620
TU153152 lncRNA upstream 13286 11523548 ~ 11524768 (+) False G113619
TU153154 lncRNA upstream 14920 11519300 ~ 11523134 (+) True G113619
TU153120 lncRNA upstream 191829 11343901 ~ 11346225 (+) True pkia
XR_005640623.1 lncRNA upstream 482253 11046565 ~ 11055801 (+) False LOC120567863
XR_005640798.1 lncRNA downstream 42642 11582904 ~ 11694250 (+) True LOC120568871
TU153240 lncRNA downstream 44174 11584436 ~ 11584636 (+) True G113682
TU153239 lncRNA downstream 168112 11708374 ~ 11722041 (+) True G113681
TU153247 lncRNA downstream 287141 11827403 ~ 11887669 (+) True G113689
XR_005640659.1 lncRNA downstream 338451 11878713 ~ 11954877 (+) True LOC120568095
XM_039815500.1 mRNA upstream 867 11530838 ~ 11537187 (+) True toe1
XM_039815054.1 mRNA upstream 161472 11365369 ~ 11376582 (+) True urod
XM_039816745.1 mRNA upstream 173358 11346445 ~ 11364696 (+) True lyn
XM_039816833.1 mRNA upstream 193517 11332568 ~ 11344537 (+) False pkia
XM_039816832.1 mRNA upstream 193517 11332571 ~ 11344537 (+) False pkia
XM_039815308.1 mRNA downstream 181855 11722117 ~ 11874494 (+) False rnf220a
XM_039815310.1 mRNA downstream 181855 11722117 ~ 11874494 (+) False rnf220a
XM_039815306.1 mRNA downstream 181856 11722118 ~ 11874494 (+) True rnf220a
XM_039815307.1 mRNA downstream 181857 11722119 ~ 11874494 (+) False rnf220a
XM_039815309.1 mRNA downstream 181857 11722119 ~ 11874494 (+) False rnf220a
TU153118 other upstream 194363 11332597 ~ 11343691 (+) False pkia
unassigned_transcript_556 other upstream 651576 10885600 ~ 10886478 (+) True LOC120568835
TU153003 other upstream 651872 10885595 ~ 10886182 (+) False LOC120568835
unassigned_transcript_555 other upstream 1995924 9542059 ~ 9542130 (+) True trnaq-cug_12
unassigned_transcript_554 other upstream 1996842 9541141 ~ 9541212 (+) True trnaq-cug_11
TU153339 other downstream 617189 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other downstream 617254 12157516 ~ 12160255 (+) False LOC120568189
TU153451 other downstream 1042380 12582642 ~ 12587163 (+) False ap1g2
TU153727 other downstream 1388953 12929215 ~ 12975637 (+) True G113979
TU153737 other downstream 1412318 12952580 ~ 12957356 (+) False LOC120569010

Expression Profile