RNA id: XM_039817010.1


Basic Information

Item Value
RNA id XM_039817010.1
length 1684
RNA type mRNA
GC content 0.41
exon number 9
gene id prtfdc1b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23725487 ~ 23734384 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGCCCCTGGTGGCAGCAGTACGTATAACACAACACAGAGGGATGTAGAGGGAAAGAGGGAACATGATGCTCCTCCTCTCTCCGCACGTTGCCAAATCCTTCTGAAGGCTTGCTCTAACACTTACCCGAAACAAGAGCCTTTTTTGTGTTTCGGCAGGAAAACAACATGGCAGACGTTGCCGTCCAATCCGACGGAAGAAGCGGCGGAATTGTGATTAAGGATGACTGGCCAGGCTACAGTTTAGACCTCTTCAGCTATCCAGCTCACTACTCTGGGGATATAGACTGTGTCATCATTCCGCATGGCGTGATTATGGACAGGACAGAACGTCTGGCTCGAAACATCATGGATGACCTGGGGGACCATGACATCGTGGTGCTGTGTGTGCTGAAAGGAGGCTACCAGTTCTGTGCAGACCTGGTGGAAAGGATCAAGGCTCTCAGCCGCAACTCCAATCGCACAATCCCCATGAGAGTCCACTTCATCCGGCTCAAGAGCTACCTGAATGACCAGTCGACAGAGGATCTTCACATACTCGGAGCAGAGGATTTGTCTTTTTTAGCTGGAAAGAACGTACTGATTGTGGAGGCCATTGTAGGCACCGGAAAGACAATGAAAGCTCTCCTGAAGCATGTTGAAGCCTTCAGGCCCAAAATGATCAAAGTAGCAGGATTGCTGGTGAAGAGAGTGCCACATAACTCAGCATGTCTTCCTGACTATGTCGGCTTTGAGATACCCGATCGGTTTGTGGTTGGATATGCCTTAGACTACAATGAGTATTTTAGAGACTTAAATCATATCTGTGTGATCAGCGAAAGTGGGAAGATGAAatacaagatttaaaaaaaggacgGCAAAAGGAGGCGACTGTCACACAGATGTCATCTGCAAGCCTGAACATTTTCCCTGAGATTCCATTCATTTACAGCTGCTATCGTGACATTTGATCTCAAGCATCCCCTGTTTTGTTATAACATTCCTTCTGTGAAACGTTAATCCGTTTAACAATAGACACTGACATTTAACTGGTAATTTTAGCAAAGCATGTGCATGCTTTACCATGTTTTTCTAAGTTGCAACTTCATTCTTCATGTTTACAGAAGTAATTCATTCAGTAGATGTTTATGCTAGGGTACTACTACTGTTTGCCTTTGTTAGTTTGACTAACAAATGACATCTCAATTTTACTTCTTTGTGTATGCAATGTAAATAACTTCATAATCATTACCTGTatgaatgtgattttttttaagtcagtGTGTGATGAGGTAACAAAGGAAACTGCTTATTTTAACATGAAAGGGAGTTGTTTTATTAGGAAAGTAGTGATATACTGTAGTTTTACATTTTCTACACCTGTACATTGCCTTTTTGATGTTTCATTAGGTAGTTCTCCTGCTGTCACCTTTAATGCTCAGGGGCAAACAAAGTAGTTTTGTAAAAACTAAGTGCACTAACTACATTACACAAACTACTACCAACTATGTACcccttattgtttttttaagtatttgagGTGTAGTGGGGTACTTTTgtcatttctgcattttcttttataatTTAACATACAGTAAAGTATTTTTTAGCATTTCAGTGTTATCGACCACTGTATTATTCTCACATTCTCTGTTGCCTTACGAAATGCATTTTCAGATGTTGATAAAAAATTAGTTTAATGTGG

Function

GO:

id name namespace
GO:0006166 purine ribonucleoside salvage biological_process
GO:0005737 cytoplasm cellular_component
GO:0004422 hypoxanthine phosphoribosyltransferase activity molecular_function

KEGG:

id description
K24196 PRTFDC1; phosphoribosyltransferase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158045 lncRNA downstream 263191 23446358 ~ 23462296 (-) True G117265
TU157960 lncRNA downstream 376303 23345770 ~ 23349184 (-) True LOC120569135
TU157969 lncRNA downstream 383564 23341354 ~ 23341923 (-) True G117206
TU157968 lncRNA downstream 384172 23339536 ~ 23341315 (-) False G117205
TU158097 lncRNA upstream 51706 23786090 ~ 23786473 (-) True G117302
TU158109 lncRNA upstream 81507 23815891 ~ 23819966 (-) True G117311
TU158107 lncRNA upstream 81727 23816111 ~ 23819966 (-) False G117311
TU158135 lncRNA upstream 107862 23842246 ~ 23843595 (-) True G117324
XR_005640816.1 lncRNA upstream 109447 23843831 ~ 23849958 (-) True LOC120568991
XM_039815094.1 mRNA downstream 1456 23682735 ~ 23724031 (-) False arhgap21b
XM_039815095.1 mRNA downstream 1986 23682735 ~ 23723501 (-) False arhgap21b
XM_039815093.1 mRNA downstream 1986 23682735 ~ 23723501 (-) True arhgap21b
XM_039815096.1 mRNA downstream 24430 23682735 ~ 23701057 (-) False arhgap21b
XM_039815259.1 mRNA downstream 154124 23492963 ~ 23571363 (-) True kmt2cb
XM_039816315.1 mRNA upstream 2594 23736978 ~ 23786041 (-) False LOC120568659
XM_039816313.1 mRNA upstream 2594 23736978 ~ 23786041 (-) False LOC120568659
XM_039816314.1 mRNA upstream 2594 23736978 ~ 23786041 (-) False LOC120568659
XM_039816312.1 mRNA upstream 2594 23736978 ~ 23786041 (-) True LOC120568659
XM_039816770.1 mRNA upstream 116689 23851073 ~ 23856621 (-) True LOC120568990
XR_005640657.1 other downstream 233875 23468620 ~ 23491612 (-) False LOC120568062
TU158039 other downstream 294495 23430366 ~ 23430992 (-) True G117259
TU157659 other downstream 1456928 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 1461989 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 2714918 21008049 ~ 21010569 (-) False higd1a
unassigned_transcript_560 other upstream 133568 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 134771 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 285978 24020362 ~ 24020438 (-) True LOC120569137
XR_005640841.1 other upstream 287055 24021439 ~ 24021501 (-) True LOC120569138
TU158445 other upstream 764996 24499380 ~ 24536496 (-) True G117560

Expression Profile