RNA id: XM_039817018.1


Basic Information

Item Value
RNA id XM_039817018.1
length 850
RNA type mRNA
GC content 0.49
exon number 7
gene id aire
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24220237 ~ 24223598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGTCACTTGTCTTTCCTTTTCAACGTGTATATTTGCTTTTGTATGTTACATGTTCTGTATCTGAGTAGGTTCAATATAACGATGATGAGTGTGCCGTTTGTAAGGACGGAGGGGAACTGATTTGTTGTGATGGCTGTCCTCAAGCTTTTCATCTGACCTGCCTGGACCCTCCGCTCACATCTATACCaagTGGCACTTGGCGGTGTGAATGGTGCTGTGGCAACAGAGTGAAAATAGAGAATGCCCAACTACCCTTACAATGTCACAGCTTCTATGAATGAGCTCAGTGGGAGAAACCAGTGCTCAGGCGCAGAGCTGCTCAGTATGGGGGAggtgtgtggtgtttgtcaCATAGAAGGAGGAGACCTGACTCACTGCCTCCAGTGTTTGCAGCGCTTCCACGAACACTGCCATGACTCCAATGTGCTTGTGTTTGCTAGAGGGAGAGCCATCTGCTCGTCCTGCTCCCGGCCCTGGGGCAGCTCTGCAGAGAAGGAGGCGGAATCATCCAAAAGCTTACAGctcGCCCCCGTGGTTCAAAACACACTAGGTCATGATCAGAGCTCCTCTGTCCTTGAGCCCACCCTCCATAAAGATGATCTGGACTCCATCCTGGGAGACCAGGGCTCCATTGACGGCATCTTGCAGTGGGCTTTCCACAACATCTCTCGGCCTCTTCCAGACTCTCAAGGATACTACCAGTGACTGGTAGATGATCTGCACTCATCTAAGAGCTCTCACAGTTTGAAGTTATACCATGAAGTAACAATGATGACATGAACATACCTAATATAAATGGAGATTACTGGATATAGTGGAGATTATATTCTTGTTTCCTGGACCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158350 lncRNA upstream 50284 24169668 ~ 24169953 (+) True G117488
TU158349 lncRNA upstream 50682 24164854 ~ 24169555 (+) True G117487
TU158338 lncRNA upstream 69466 24150458 ~ 24150771 (+) True G117476
TU158223 lncRNA upstream 144922 24073887 ~ 24075315 (+) True G117389
TU158250 lncRNA upstream 175753 24043969 ~ 24044484 (+) True G117406
TU158403 lncRNA downstream 33956 24257554 ~ 24258831 (+) True G117523
XR_005640665.1 lncRNA downstream 114095 24337693 ~ 24339256 (+) True LOC120568139
TU158431 lncRNA downstream 332821 24556419 ~ 24556657 (+) True G117547
TU158430 lncRNA downstream 345980 24569578 ~ 24576002 (+) False LOC120568789
TU158539 lncRNA downstream 614358 24837956 ~ 24838229 (+) True G117632
XM_039816817.1 mRNA upstream 3782 24209550 ~ 24216455 (+) True rab6bb
XM_039816819.1 mRNA upstream 3782 24209550 ~ 24216455 (+) False rab6bb
XM_039816811.1 mRNA upstream 10785 24200243 ~ 24209452 (+) False espnlb
XM_039816401.1 mRNA downstream 17108 24240706 ~ 24247620 (+) True amotl2b
XM_039815560.1 mRNA downstream 29790 24253388 ~ 24257335 (+) True LOC120568200
XM_039815561.1 mRNA downstream 35865 24259463 ~ 24267286 (+) True LOC120568201
XM_039815562.1 mRNA downstream 46086 24269684 ~ 24278078 (+) True LOC120568202
XM_039815425.1 mRNA downstream 150691 24374289 ~ 24545760 (+) True tnr
XR_005640839.1 other upstream 165533 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 165533 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 196578 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 305739 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 311836 23905870 ~ 23908401 (+) True G117353
TU158470 other downstream 444295 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 450326 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 726970 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1531495 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1552293 25775891 ~ 25793954 (+) False LOC120568895

Expression Profile