RNA id: XM_039817021.1


Basic Information

Item Value
RNA id XM_039817021.1
length 1538
RNA type mRNA
GC content 0.58
exon number 10
gene id proca
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3972332 ~ 3983995 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtgTGTTCAGCAGCAGACTGTGGACTCTCAGTAAACACTGGCAGTCAGTCATTAACACACCAGAAACAGGGCGAACCATCGTCTCTGTCCTCGGCTTCCATTCTTCATACTTCATCTTTGATCTGGTCATGTCGCGTCTCATCCTCCTTTGTGTGTCCGTCCTTGCCGCTGTGGGGTCGGTGTCTGGGCTCAGTCTTTCagtgttCTCGGATGCCCCGAAGGCTCACATGCTGCTCCGCTCTCGCCGGGCCAACTCCTTCCTGGAGGAGCTGAAACCGCCTTCGAAGGAGCGTGAATGTGTGGAGGAAAGATGTGACTTTGAAGAAGCCCGAGAGATTTTCCAAACCAGGGAAGCGACAcTGGATTTCTGGACGGCGTACATCGATGGGGACCAGTGTAACGCCAACATGTGTGTTCACGGAGCCTGTGAGGATCTGCACCAAGACTACAGCTGCCGCTGTAACCAAGGATACGAAGGCAAATACTGCGACCAGCCTCAAACGGCCACTAACTGCTCGCTGGATAACGGCGGCTGTGACCACGAGTGTTCGGACAGCGAGGACGGCCTGACGAGGACCTGCACCTGCGTGAGCGGATACAATCTGCTCGACGACTCCAAGAAATGTGCCCCGAAAGGTCAATCGTCCTGTGGACAGCTGCTGATCGACAGGTCATCATATTCCAAACCGAAGGAAGGCCTGCTGCCCTGGGTGATGGGAGGGGAGGTGGGGAATAAGGGCGAGAATCCCTGGCAGgtgcTGTTACTGAACGCCAGAGGGAAGTTCCACTGCGGAGGCGTCCTCATCGATGAGAGCTGGGTGCTGACCGCCGCTCACTGCCTCGAACACAACCTCCGGTTCTCAGTACGACTGGGCGACTACCTGCGTTACCAAGACGAAGGCACCGAGGTGACCCGGAAGGTGGAGAAGGCCTTCAAACACCCGAACTACGACAGCGAGACGGTGGACAACGACATTGCCCTGCTGCGCCTGAAGACGCCCACCTCCCTGTCCAAGTACATTGTCCCCGTCTGTCTGCCGGGACGCCAGATGGCGGAGCGGGTGCTCCACCTGAACGGCACGCTCACCGTGGTGTCCGGCTGGGGCAGAGACAACCCTAACCGCACTCAAATGAGCTCGGTGCTCAACATCATCAAAATCCCGCTGGTGGACCACAGCCTCTGCGCCCGCCAGATGTCCAACAACATCTCCGACAACGTCCTCTGCGCCGGGGAGCTGGGAAAGAAGATGGACGCCTGCGAGGGGGACAGCGGTGGACCGATGGTCACTCTGTACCGGGACACGTGGTTCCTGCTCGGCCTGGTGTCCTGGGGCGAGGGCTGCGGCCGTGTGGACAAGCTGGGCGTCTACACCAAGGTGTCCAACTACAACGAGTGGATCACCAGAGTTCGTGAAGACTGGGACAAAACTCCACACCCACAGGAACCCCAGCATGTCAGAACCGCCTCGACCCACAGGGGTCGATCCCGACTGGTAGGGATGTAACACGCTTTATGAATAAACTGATTCTGTCTCAA

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150988 lncRNA downstream 3114 3967994 ~ 3969218 (-) True G111997
TU150892 lncRNA downstream 151142 3803176 ~ 3821190 (-) True LOC120568335
XR_005640700.1 lncRNA downstream 168826 3800195 ~ 3803506 (-) False LOC120568335
XR_005640699.1 lncRNA downstream 169837 3800195 ~ 3802495 (-) False LOC120568335
XR_005640708.1 lncRNA downstream 251210 3718266 ~ 3721122 (-) True LOC120568342
TU151003 lncRNA upstream 55889 4039884 ~ 4040197 (-) True G112007
XR_005640616.1 lncRNA upstream 90734 4074729 ~ 4082082 (-) False LOC120567799
XR_005640614.1 lncRNA upstream 95584 4079579 ~ 4082082 (-) False LOC120567799
XR_005640615.1 lncRNA upstream 95584 4079579 ~ 4082082 (-) True LOC120567799
TU151022 lncRNA upstream 106513 4090508 ~ 4138931 (-) True G112018
XM_039816101.1 mRNA downstream 82416 3883756 ~ 3889916 (-) True LOC120568530
XM_039815750.1 mRNA downstream 100517 3861329 ~ 3871815 (-) True LOC120568324
XM_039815745.1 mRNA downstream 211693 3749457 ~ 3760639 (-) False LOC120568321
XM_039816388.1 mRNA upstream 17446 4001441 ~ 4018262 (-) True saga
XM_039816390.1 mRNA upstream 18146 4002141 ~ 4018262 (-) False saga
XM_039814702.1 mRNA upstream 37172 4021167 ~ 4027586 (-) True cldn15la
XM_039815667.1 mRNA upstream 126751 4110746 ~ 4121351 (-) True si:ch73-170d6.2
XM_039815664.1 mRNA upstream 161868 4145863 ~ 4168656 (-) True slc39a6
TU150514 other downstream 602393 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 743185 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 830462 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 980486 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 1394318 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 51547 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 254107 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 254107 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 254107 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 254107 4238102 ~ 4238670 (-) False G112043

Expression Profile