Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039817023.1 |
| length | 2359 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 6 |
| gene id | si:ch211-227n13.3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053122.1 |
| NCBI id | CM020919.1 |
| chromosome length | 39550354 |
| location | 13159016 ~ 13163518 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006399 | tRNA metabolic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0071704 | organic substance metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034660 | ncRNA metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU153769 | lncRNA | upstream | 5422 | 13152099 ~ 13153594 (+) | True | G114008 |
| TU153756 | lncRNA | upstream | 84422 | 13010575 ~ 13074594 (+) | False | col6a1 |
| TU153760 | lncRNA | upstream | 130846 | 13027079 ~ 13028170 (+) | True | G114000 |
| TU153732 | lncRNA | upstream | 244795 | 12913617 ~ 12914221 (+) | False | LOC120567760 |
| TU153729 | lncRNA | upstream | 251904 | 12906596 ~ 12907112 (+) | False | LOC120568152 |
| TU153788 | lncRNA | downstream | 19821 | 13183339 ~ 13186363 (+) | False | si:ch73-71c20.5 |
| TU153799 | lncRNA | downstream | 32743 | 13196261 ~ 13198734 (+) | True | G114033 |
| TU153802 | lncRNA | downstream | 36250 | 13199768 ~ 13200746 (+) | True | G114035 |
| TU153804 | lncRNA | downstream | 41307 | 13204825 ~ 13207023 (+) | True | G114037 |
| XR_005640785.1 | lncRNA | downstream | 87233 | 13250751 ~ 13254585 (+) | True | LOC120568783 |
| XM_039815662.1 | mRNA | upstream | 33553 | 13123030 ~ 13125463 (+) | True | ndufb3 |
| XM_039815659.1 | mRNA | upstream | 36343 | 13118569 ~ 13122673 (+) | True | pecr |
| XM_039815661.1 | mRNA | upstream | 41665 | 13114596 ~ 13117351 (+) | True | rpl37a |
| XM_039815655.1 | mRNA | upstream | 46752 | 13106699 ~ 13112264 (+) | True | orc2 |
| XM_039815656.1 | mRNA | upstream | 46752 | 13106699 ~ 13112264 (+) | False | orc2 |
| XM_039817024.1 | mRNA | downstream | 321 | 13163839 ~ 13166831 (+) | True | LOC120569132 |
| XM_039816866.1 | mRNA | downstream | 13307 | 13176825 ~ 13183207 (+) | True | mcm6 |
| XM_039816320.1 | mRNA | downstream | 19766 | 13183284 ~ 13186364 (+) | True | si:ch73-71c20.5 |
| XM_039816336.1 | mRNA | downstream | 49798 | 13213316 ~ 13223854 (+) | False | LOC120568679 |
| XM_039816335.1 | mRNA | downstream | 53442 | 13216960 ~ 13223854 (+) | True | LOC120568679 |
| TU153770 | other | upstream | 33553 | 13123055 ~ 13125463 (+) | False | ndufb3 |
| TU153768 | other | upstream | 41660 | 13114649 ~ 13117356 (+) | False | rpl37a |
| TU153727 | other | upstream | 183379 | 12929215 ~ 12975637 (+) | True | G113979 |
| TU153737 | other | upstream | 201660 | 12952580 ~ 12957356 (+) | False | LOC120569010 |
| TU153451 | other | upstream | 571853 | 12582642 ~ 12587163 (+) | False | ap1g2 |
| unassigned_transcript_558 | other | downstream | 54621 | 13218139 ~ 13218210 (+) | True | trnae-cuc_17 |
| TU154336 | other | downstream | 1123632 | 14287150 ~ 14295268 (+) | False | LOC120568245 |
| TU154337 | other | downstream | 1124837 | 14288355 ~ 14290960 (+) | False | LOC120568245 |
| TU154338 | other | downstream | 1126019 | 14289537 ~ 14295993 (+) | False | LOC120568245 |
| TU154339 | other | downstream | 1129242 | 14292760 ~ 14295268 (+) | False | LOC120568245 |
