RNA id: XM_039817025.1


Basic Information

Item Value
RNA id XM_039817025.1
length 990
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120569133
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 30055815 ~ 30057109 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAGACACAGGACGGAGCAGAGCTCTGCTTTCCACAACTCTTCAACACCTCCTGTAGGAAGCTGACACCTCCTTGGTTTGAAGTGATGTTCATTCACATTTTTCTCTACtccatctctctgctcactGTAGCTCTCAACCTGCTTGTCATCATCTCAGTCTCCCACTTCAGgcagctccacacacccaccaacatcctcctcctctctctggctgtctcagacCTTCTAGTGGGTCTCGTGGTGATGCTGGGAGAAATCCTCCAAAAaacatcctgctggtttcttggtGACCTTGTGTGTACTCTGTATACGTATGTTACAGTCATCATTCCCGTATCCTCAGTAGGTGACATGGTGCTCATATCAGTTGACCGTTATGTGGCTATTTGTGACCCTCTGCATTACAGCATCAGAATCACTGTCAACAGAGTtaaactctgtgtttgtctgtgttggctcTGTTCCGTTTCCTACAGCTTTCTGTTTGTGAAGGATGAACTGACTCAACCAGGGAGGTATAAGTCCTGCCACGGAGAATGTGTGTTGGTCATTGACTATTTCACAGGAGTAATAGATGTTGTTTTGTGCTTTATTGTCCCAGTTACTGTCATCATAGCTCTGTATCTGAGAGTATTTGttgtggctgtgtctcaggctcgtgccatgcgctctcacattacagctgtcacactccagcatttagtgactccaaaggcaaagaaatcagagctgaaagcagccagaaCTCTTGGTGTTCTTGTAGTCGTGTTCCTACTATGTTTCTGCCCATATTACTCTGTGTCTCTTGCAGGTGACAGCTTCGTTAATGCTTCATCTGCATCCTATGTTCTCTTTGTGTGTCAATTTAACTCCtgtctaaaccctgtgatctatgcctttttttacccctggtttagaaaagcaTTTAAACTTATTGTTACTCTTCagatactgcagcctggctcctgTGAGACCAACATTCTGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160293 lncRNA upstream 88198 29967378 ~ 29967617 (+) True G118951
TU160286 lncRNA upstream 142157 29913450 ~ 29913658 (+) True G118944
TU160285 lncRNA upstream 147336 29907833 ~ 29908479 (+) True G118943
XR_005640601.1 lncRNA upstream 364921 29690460 ~ 29690894 (+) True LOC120567652
XR_005640599.1 lncRNA upstream 467269 29587645 ~ 29588546 (+) True LOC120567627
TU160306 lncRNA downstream 20290 30077399 ~ 30077712 (+) True G118964
TU160307 lncRNA downstream 20709 30077818 ~ 30078210 (+) True G118965
TU160338 lncRNA downstream 206150 30263259 ~ 30263559 (+) True G118994
TU160393 lncRNA downstream 395018 30452127 ~ 30453137 (+) True G119030
TU160395 lncRNA downstream 395618 30452727 ~ 30462896 (+) False G119030
XM_039816946.1 mRNA upstream 9625 30044894 ~ 30046190 (+) True LOC120569089
XM_039816652.1 mRNA upstream 22281 30031910 ~ 30033534 (+) True LOC120568908
XM_039814657.1 mRNA upstream 85902 29963415 ~ 29969913 (+) True LOC120567689
XM_039814656.1 mRNA upstream 312223 29735520 ~ 29743592 (+) True LOC120567688
XM_039814655.1 mRNA upstream 363462 29690957 ~ 29692353 (+) True LOC120567686
XM_039816413.1 mRNA downstream 44525 30101634 ~ 30218722 (+) True LOC120568730
XM_039816208.1 mRNA downstream 511986 30569095 ~ 30677352 (+) True LOC120568595
XM_039816206.1 mRNA downstream 511986 30569095 ~ 30643638 (+) False LOC120568595
XM_039816207.1 mRNA downstream 512236 30569345 ~ 30643638 (+) False LOC120568595
XM_039814660.1 mRNA downstream 950613 31007722 ~ 31011324 (+) True LOC120567691
TU160295 other upstream 85965 29968413 ~ 29969850 (+) False LOC120567689
TU159791 other upstream 1896226 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 2446097 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 3169785 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 3285904 26765492 ~ 26769911 (+) True G118149
TU160411 other downstream 512286 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 1114108 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 1141851 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 1402755 31459864 ~ 31460908 (+) True G119257
TU160764 other downstream 1808646 31865755 ~ 31868793 (+) True dnaaf6

Expression Profile