RNA id: XM_039817029.1


Basic Information

Item Value
RNA id XM_039817029.1
length 3252
RNA type mRNA
GC content 0.49
exon number 28
gene id LOC120569134
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23325302 ~ 23343895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACGGCTGTCAGCTGTTTGACATGATCACATTTCGGCAGTGAAGTGTTTGGTACCCCAACTGGCTAAACCAGACCAAAGTCTGCGAGAGTTGGGTGAATTAAGAGTTGAAAATCCTTACCTGAAGTCAAGTGGTGATGGAGACCGATACACTTGAGGAAAAGCTTCTCCTCTACGCTAAAGCGGGCAGTTGTTCTCATATTCAAAGGCTCCTTGAGTCGAGAATAAACCAAAGCAGCTCTCTAAACGTCAACTTCAGATCTAGGGCTAAAGCCAGCTTAGGATGGACACCCCTCCATCTCGCCTGTTACTTTGGACACATGGATGCTGTGGAGAAGTTACTCAAGGAGATTGTTCTGTTGCTGCTGCGGTATGATGCCTGTTCCAACATAATCAATGGAACAGCTCAAATCCCTAAAGATGTCACAGAGGATGATGAAATCATTACAATGCTAGAGGCTGcagagagaagagcaaaaaGGCGGTTGGAGGAGAAGCTTCTGGAAGCAGCCAGAGAGGGAGACATTTCCACTCTGTCTAAAATGCTCAGTGGAAAAGAAGCTCCAGATATTCACTGCAGGGACTCGGTGGGGAATACGCCCTTACACTGTGCAACCTACAGGGGGCAGAAGCAGTGCATTATAAAGCTGCTCAAGTCTGGAGCCAGCCCCAGTACTAAAAACAACAATGACCAGACAGCGTTAGACTTGGTTCGCAGTGATGAACTGAGACCAATTCTAGCAGCCTATCAAGACAAGGATGTGAGCAGTGGGGTCCAGAAGATTGAAGGCCCTCTTTGGAAGAGTTCACGTTTTCTTGGATGGCGATCCCACTGGGTGATAGTTGAGGATGGAACTCTCTCCTGGTATCCCAGACAGGCTGATGCGCTGGCTGGTGTCAGAAAACAGGGCTGCAAGTCTCTGACACAAAGCTACTGCACGGTCAAACCATGGGATCATTGCTTCTTCATGCTCAGGTGCTTTGATGACACtgtacattattttaaggtCCCCTCAAAGACAGATTCAGTGGCAACAAGAAAGAGATGGTTGAATGCTTTTGAGGCACATTCATCCTATAGCACTCGCCAGTGCACCCAGGAACAGATTATCAATGATGCAGATGGCGATGGTGGCGTGACAGTGAGGCATCTGTCACAAGCCCTTCAGGCTGCCAACACTTCCCAGCAGCAATTGGAGAGTGAAGTGTCAATATTTCTATCGATGGTGAAGAATGAGGAGAATTGTGCATTGGCTGCCCCTCTTTTACTGAAAGCCAAAGAGACCAGTGATCTCTCCAGTGAAACCTGTGCTGCTCTCCATCTGTGCCTTGAACTGCTGTCAAAACAAGAGGAGGTGTGGAGCCTGAAGTTAGAGCAGGAGGTGGAGAAGAACAAGGCTCTGACAGAGGCTCTGCACACATTGGCAACTGAGCACTACGAACTCAAGCAGTCCCTGTGTAAGAGCAGGAGGCCCTCTACTCTCAGTACCCTCACTGAAGATGACTTCTATGATGCTGTATCAGAGTCGGAGCTCTCGGTGAGCGGCTTCCTGTCTGTGGCCAGTCAATCTTGTGAAGAGGACGAGGGCCGAGACAACCCCCTTCTCAGCAGCCTCCGCCATCCCAGCGCACTCGGGGGACCTACCGGAATGTCAGGGGAGGGTAACCATGGCAACCAACCCGCCCAGTACAACGGAGTCGAGAAGCACAGAACATCTCTACCGGCTCCCATGTTCTCCAGGAATGATGTCAGCATCTGGAGTATcctaaaaaaatgcattggcatGGAGTTGTCAAAGATTGCCATGCCTGTAATATTTAATGAGCCTCTGAGTTTCCTCCAGCGGTTAACAGAATACATGGAGCACACCTACCTCATCCACCAGGCCAACGCCACAACCGACTCTGTCGAGCGGATGAAGTGTGTTGCAGCATTTGCTGTGTCAGCTGTAGCATCGCAGTGGGAGAGGACTGGGAAACCCTTCAACCCACTACTGGGGGAGACCTATGAGCTCATCAGAGACGATTTGGGCTTTAGGTGGGTGTCAGAGCAAGTAAGCCATCACCCTCCAGTCAGTGCCTTTCATGCTGAGGGCCTCAATGAGGATTTTGTCTTCCATGGCTCCATCTACCCCAAACTCAAGTTTTGGGGAAAGAGCATAGAAGCTGAGCCCAAGGGACTCATCACACTGGAGCTGCCCAAATATAACGAAGCATACACCTGGACAAACCCCACCTGTTGTGTCCACAACATCATTGTTGGTCAGCTTTGGATTGAGCAGTACGGCAGCGTGGAAGTGCTCAATCACAAGACCGGAGAGAGATGCAGCATGATGTTCAAGCCCTGTGGCCTCTTTGGAAAAGAGCTCCATATAGTGGAGGGATACATCCTTGATAAAAGCAAAAAGAAGCTCTGTGCGATTTATGGCAAATGGACTGAATGCCTCTACACAGTAGACCCCGCTACCTTTGAGGCCCACAAAAAGACTGACAAAAAGAATTTGGATGAAAAGAAGGGCAATAAACAGAGCAGTGTGGATGAGGAGCCAGAAGAGATGCCTCCACCTGATGCTGAGACAGCCCAGGTCATCCCCGGCAGTGAGCTCATCTGGAAGATAACGCCACGACCAGACAACTCAGCCAAGTTCTATGCATTTTCTACGTTCGCCATGCACCTAAATGAGCAGGAGAAGAGCATGGAGGGAGTTATTCCCCCAACAGACAGTCGCCTCAGACCTGACATCCGCGCCATGGAGAATGGAGATATAGATTTGGCAAGTGCAGAGAAGAAGAGACtggaggaaaaacaaagaatggCCCGGAAAAATCGCACCAAATCAACAGATGAATGGAAAACGAGGAACGCTGCACTTGGCCCAAGGTGGTTTCAGCAAGGACCCAACCCTCACAACAAAGCTCAGGACTGGCTCTACTCGAAAGGCTACTGGGACAGAAACTACACTCACCTGCCTGAAATCTACTAAGAAGTAGAAATGCACACAATTATACCATACACGTGGATATCTACTTTAACCACCTTTTGGATGTTATCTGCTGTACTGGGGTTTGTGCAAGGGCTCCCTAGCACATGCAAAAAGGTCATGGAGTTGGTACAGAAGAGCAGGTAGGGTTGGGTTGAGAAGAAATgcttaaaaatgtctttaaagcCGTCAAAAGGCAGTAAAACACCGAATAAACACCAAAGGCATAAATTATTTAATAGATGTGTGTGAACAATGAAGCACAAAAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157860 lncRNA upstream 407197 22917876 ~ 22918106 (+) True G117128
TU157795 lncRNA upstream 570813 22752252 ~ 22754490 (+) True G117082
TU157787 lncRNA upstream 577571 22747120 ~ 22747732 (+) True G117077
TU157668 lncRNA upstream 852463 22465335 ~ 22472840 (+) True G116978
XR_005640771.1 lncRNA upstream 1010356 22307767 ~ 22314947 (+) True LOC120568744
TU157944 lncRNA downstream 29815 23373710 ~ 23374199 (+) True G117187
TU157950 lncRNA downstream 33238 23377133 ~ 23378516 (+) True G117190
TU157982 lncRNA downstream 95676 23439571 ~ 23440835 (+) False kdsr
TU157984 lncRNA downstream 102456 23446351 ~ 23462300 (+) True G117219
TU157987 lncRNA downstream 124725 23468620 ~ 23514085 (+) True G117220
XM_039815861.1 mRNA upstream 22514 23212678 ~ 23302789 (+) False LOC120568373
XM_039816495.1 mRNA downstream 78821 23422716 ~ 23433374 (+) True vps4b
XM_039816496.1 mRNA downstream 81475 23425370 ~ 23433374 (+) False vps4b
XM_039815252.1 mRNA downstream 89730 23433625 ~ 23440843 (+) True kdsr
XM_039815258.1 mRNA downstream 97696 23441591 ~ 23467811 (+) True bcl2b
XM_039815089.1 mRNA downstream 248837 23592732 ~ 23681748 (+) False LOC120567964
XR_005640697.1 other upstream 646572 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 712894 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 1427912 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 2410015 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 2949670 20373235 ~ 20375633 (+) True LOC120567833
TU158062 other downstream 333184 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 506984 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 524359 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 561975 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 568769 23912664 ~ 23914498 (+) True hes6

Expression Profile