RNA id: XR_005640602.1


Basic Information

Item Value
RNA id XR_005640602.1
length 224
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120567662
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 5397609 ~ 5401816 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAATACTTGTTTATCCAGGCACATGGAATACCTAAAACACCAAAGCCAGGAAGTATGCCTCAATTCTGAGAGCAACACTGAGATATGTACTGCTGAGAGATCACATGATGATGTTGGTGGTGACCCAGATGTACCACCCCTGAGATATGACAGCGTATCTGAAGGAAGCCTAGATTCTGAGAGCAACACTGAGATATGCACCCCTGAGAGTTCACATGATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151256 lncRNA upstream 120548 5276791 ~ 5277061 (+) True G112195
TU151254 lncRNA upstream 160636 5236384 ~ 5236973 (+) True G112193
TU151202 lncRNA upstream 503083 4891553 ~ 4894526 (+) True G112154
TU151204 lncRNA upstream 506139 4888601 ~ 4891470 (+) False G112155
XR_005640631.1 lncRNA downstream 8135 5409951 ~ 5412220 (+) True LOC120567911
TU151278 lncRNA downstream 19215 5421031 ~ 5486593 (+) True G112217
TU151280 lncRNA downstream 19215 5421031 ~ 5482291 (+) False G112217
TU151305 lncRNA downstream 297518 5699334 ~ 5699554 (+) True G112237
TU151314 lncRNA downstream 303815 5705631 ~ 5706883 (+) True G112246
XM_039816414.1 mRNA upstream 61117 5199093 ~ 5336492 (+) True adcy8
XM_039814499.1 mRNA upstream 509397 4837464 ~ 4888212 (+) True oc90
XM_039814498.1 mRNA upstream 509397 4839558 ~ 4888212 (+) False oc90
XM_039814912.1 mRNA upstream 562556 4805564 ~ 4835053 (+) True LOC120567839
XM_039814535.1 mRNA upstream 612238 4616033 ~ 4785371 (+) True kcnq3
XM_039816108.1 mRNA downstream 2637 5404453 ~ 5408621 (+) True LOC120568538
XM_039815523.1 mRNA downstream 99867 5501683 ~ 5668717 (+) False myo10
XM_039815522.1 mRNA downstream 99868 5501684 ~ 5668717 (+) True myo10
XM_039816132.1 mRNA downstream 386407 5788223 ~ 5789417 (+) True LOC120568547
XM_039815242.1 mRNA downstream 515333 5917149 ~ 5924931 (+) False rnf182
TU150839 other upstream 851527 4545425 ~ 4546082 (+) True G111910
TU150815 other upstream 858404 4528364 ~ 4539205 (+) False dnaaf11
TU150822 other upstream 858404 4528364 ~ 4539205 (+) False dnaaf11
TU150808 other upstream 867860 4527915 ~ 4529749 (+) False dnaaf11
TU151330 other downstream 386540 5788356 ~ 5789292 (+) False LOC120568547
TU151409 other downstream 601869 6003685 ~ 6016600 (+) False LOC120568055
unassigned_transcript_535 other downstream 838365 6240181 ~ 6240262 (+) True trnas-cga_6
unassigned_transcript_536 other downstream 839006 6240822 ~ 6240903 (+) True trnas-uga_21
TU151560 other downstream 849574 6251390 ~ 6321990 (+) True G112400

Expression Profile