RNA id: XR_005640619.1


Basic Information

Item Value
RNA id XR_005640619.1
length 369
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120567841
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31660615 ~ 31663824 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGTCTTGGGAGTcgaactgaatcattacactGGCTGAGCAATGCCAGCCAGGGGTATCCAGATACATTGCGCAACAAGGAACAATGGCTGCCAGGTCGACCAGAGAGAcccataaatggacgcCGGAGGAAACCCAGCAGCTGATCCACTTTCTGGCTGAAAACGAGCAATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGACAGAAGACGGAGCTTCAGGCCAAACTGGTCTAATCTTCATCCATGGCTCGAGTATTCTGTCATGATGGACTCTACATATTGCTATGCAAGTAgacgtttttaattttttattgccCTACCTCTC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160702 lncRNA downstream 46291 31614016 ~ 31614324 (-) True G119284
TU160691 lncRNA downstream 189456 31469613 ~ 31471159 (-) False zeb1a
TU160678 lncRNA downstream 203461 31456893 ~ 31457154 (-) False LOC120568745
TU160677 lncRNA downstream 205218 31455053 ~ 31455397 (-) True G119260
TU160676 lncRNA downstream 205657 31454479 ~ 31454958 (-) True G119259
TU160792 lncRNA upstream 185614 31849438 ~ 31915814 (-) False G119347
TU160786 lncRNA upstream 248854 31912678 ~ 31915608 (-) True G119347
TU160790 lncRNA upstream 248854 31912678 ~ 31915608 (-) False G119347
TU160804 lncRNA upstream 252830 31916654 ~ 31917970 (-) True G119357
TU160805 lncRNA upstream 254215 31918039 ~ 31919127 (-) True G119358
XM_039815925.1 mRNA downstream 85422 31469595 ~ 31575193 (-) False zeb1a
XM_039815926.1 mRNA downstream 86925 31469595 ~ 31573690 (-) True zeb1a
XM_039816425.1 mRNA downstream 203458 31455599 ~ 31457157 (-) True LOC120568745
XM_039816682.1 mRNA downstream 458423 31200541 ~ 31202192 (-) True LOC120568926
XM_039816680.1 mRNA downstream 504890 31049685 ~ 31155725 (-) False LOC120568925
XM_039816310.1 mRNA upstream 18376 31682200 ~ 31692546 (-) True LOC120568656
XM_039816309.1 mRNA upstream 32979 31696803 ~ 31710791 (-) False LOC120568655
XM_039816308.1 mRNA upstream 32979 31696803 ~ 31710791 (-) True LOC120568655
XM_039815236.1 mRNA upstream 50463 31714287 ~ 31799338 (-) True LOC120568044
XM_039815230.1 mRNA upstream 50463 31714287 ~ 31786187 (-) False LOC120568044
TU160692 other downstream 85425 31490252 ~ 31575190 (-) False zeb1a
TU160586 other downstream 485664 31126430 ~ 31174951 (-) True G119177
TU160575 other downstream 489005 31169922 ~ 31171610 (-) True G119169
TU160576 other downstream 489005 31170382 ~ 31171610 (-) False G119169
TU160545 other downstream 784535 30864246 ~ 30876080 (-) True LOC120568929
TU160835 other upstream 383653 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 552678 32216502 ~ 32226360 (-) False G119465
TU160945 other upstream 554683 32218507 ~ 32226360 (-) True G119465
TU161095 other upstream 1098521 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 1098521 32762345 ~ 32765076 (-) False fcer1gl

Expression Profile