RNA id: XR_005640667.1


Basic Information

Item Value
RNA id XR_005640667.1
length 3194
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC120568180
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22025113 ~ 22036950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACTTCCTGTATTCTTTCTGGCAGGGAGCGACCACACAGAGCACAACACCGCTCGCACCGGACAATTGTTTACATCGATGCTGCAGAAAGTCAAGAACAATTATAACAGGGGTCTGGCAGAAATCCAGCTGACCCGGAGTGCTATTGGGCTGACCCAGCAAGATACATGGGCTGAGTCGAAGCAGGGTCTCTGCAGACTGGCCTTTAGCTCTTTTTCATTGAAAACAGACTCCCACTGGCCTGCTTTTGGCTTTGCAAATATGTTCCTTTATTTGCTTTGCCCCCCATACTACCACACCacaatactaataataatgacCCTGAATGAAAATCTCCACACTGGACCAATTTACAAACTCGCAAAGGAACATCTCAGTATGAGTTGGGTTATTGAGTTGCAAGAGATGATGTCTGCTGCTGATGCTTTATTATCCTCAGAAAATAATTTCTCAAGGCAATGCTTGTCAGTTCACAATAATAGCATGATGCCACCCACACAAATACAAAGCTAATCTGTCTGTAAGACCGATGCACCTTCCATATTTATTTAAGTGCATTAAACTGGGATGCAGCTACTGTATTGTTTTGAATCCAGCAGCGGCATGTAGGTAGCAGAGCAAAATTCAATCCGTGGCTCTCTCTACTAAGAACACCTGGTGAGGGGACAAGCATCACGCTGAGGGCCTGCGCAGACCCCCACCAGCAAGAGGCTGCAAATCAAAGCATCAGAGGTGTTTCATCTCTTCGCTGGAGTCTCAGTTTTTCATCCGGGGTTAAGACTGAAAGACTGACACTTAAACTTATGGCTCCTCACATCTACAGCCACGAGCAGATCCTCTCGCAGACGCACGAGGGAGAAACCTTGACGAGGCGCATGAGAGGAAAACCAGCACATTTGGGTATGTCTAAAACCTTCAAAGCATTCTCCGTCAGCCAGATCTTTTTAGTGATTCAGCCTATAGCACAGACTAGCACATGGAAAAAGATATCCTATATTTTTTGGCagcatgtgttttttgtgtttctctGGACCTTGAGGTTCATGGAGCCCCCGCAAAATGAAGTGAGAGCTTGCAGCAGCTGCCAGACGGCATGTAATATGGACATACTACCTCCTCTGATGAGGTCGAGAGGAAAGACAAATTTTCAAAAGGAGAACGGAAATAAGAGGATTAGggcttataatgtgtgtgcaaccTCCCACTAAGACAAGTGTGCCTTGTTGCAGAATACCTGTGACTCATGTAAGGGCTGTTTACAATGGATTCATAGACAGTCACAAGACAAAGGAggagcattttgattggttggtGCAGACTGTGTTGGTGGCAGATGTGACACTTAAAAAGCTGAAGGTCATTAACAGtacctttttaatgttttcctGAAGCacatatttttaataataaaaggcACATTCTGAATCCCACTGTCACTGAACCCCTTTACTTATTACTACCTAATTTGTTGTTATTCATTCTAAATTGTAATTAAATGTGCCGCAACACCTCGGCAGCAGATGGGCTCCTAAAGCGCacagaaaataattaaaagggGATTTTAATGACCTTAATAAATAACCTGTGATTGTGAGAAATGATCTAAGAAATGTCGTTTTGAAAGAAGACGTTGTGCATTGTTGGCCTATGTTAGTCACCATGTGCAAAGGATTTACTTGCAATCTAGTGTTTGGAGtactaaagcaaaaaaaaaggattacgTTAACTTGGTCCGAATTTTGAAATTGAAGTAATTAGTAAAGTAAGTGGAACACGTTTATTTGCTCAAAAACACCAGACAGAGTAGCCAAATGTAGTGGAAGCAATGCCAACAAAACACAACTGTTCCCACATTTGCCCTATTATCGTATCCAGGTTATAAAAGGTTTGATTGATGGAGGCGTTGGCAGAGCAGCGAAAATTGCTCTCTTGGCATATTTACATGTGGTATATCACTGCCTACAGAGTGAGTGACTTGGCATTTGTGCCATCCGCAAACATTAATAAgacataaataaatagaatGAGGGAAAGGTGATTATGTATGTCTGTTGGGATTTTGGAGCAGGATGCTTCTGACAAAAGAACAGGCTCCCTCGCCAAGCCTCTATCAGCTTCCTAAGTCATATCAGATGTTTGGGCTTTATTGGGACTTGAAATAGTTTTAAGCCTGAGCACCCGCCCTGCTGGATTTATCTCCTGCgaaataaagacacacacaataatgaGTACCACTTAGTGTGATATCTGTTTCTTCtacaaattttttttctttaaatctaAAACTACACCTTGAATTAtgacaggcaggtgaatggtagTTAATGTAACAGGCAATATATCTCTTGACAAGACTAGTATCCttgaaatttattttttacagagcCAGTCTTGTTACAACTGGACTGCTAAAATGTCTTCTTCAATGGATTAAAGAAAAACCTCCATCAAACAATGTACAACACAGCCACTGTGGCTCTGAATAAAAACCTCATTGCCGTGGAACAGTGTAGACGTTTTGCTCAGCCTGTACTGAAAACCTTCGGCAGCAGGGATTAGGAGAGAAGATGGAGCATTTATGTCGTCCACTGCATGTTTCCTAAATTACACTATGCGGGTCATTTCCATAGGGGGGAAAAAGTAGGCCTGCGGCGTATCTAATTTGTCTATAATACCAGCAGAAATAGAGAATCTTCTGCCAAGCAGCATCTCAACTTCTCCCTTTGTTTGACATCCCGTTGCCGGAATTGCAAAACTCTGCCAATCTCCTGCCGATATTCCATGAAATCAgccgaaaaaaacaaaacaagtcatGCACTGGAAAGATTGTTTTATAGATATCCAATGTGTTTTAATTTACAATTCCTGAAGTATTCAGTTGTTTAGTTTTTACTGCAAAAGTATTTCCAAAACACATTAAACATGAattatttttactatttttgTGCTATATTGATAATTGACAATTTACTAAAGTGGGTAAACgtagttttttttagctttttaaatCAACTGGACTAGCCAGTGTTATAATTCATAAAGGTATACTAAATCTGATTATAAACCTGGTCAGCAGTAGAGTGTAAATGGCTGTGGTTGTACAGGtttgaatgtgtaactgtataAAAGTGTACTGGGGacttgcatttattttattagacAACATAAAACTGTATTCACCCTAATTCCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157508 lncRNA upstream 4835 21935519 ~ 22020278 (+) True G116857
TU157416 lncRNA upstream 186361 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA upstream 188766 21834466 ~ 21836347 (+) False G116794
TU157363 lncRNA upstream 362643 21614100 ~ 21662470 (+) True G116746
TU157330 lncRNA upstream 524719 21454330 ~ 21500394 (+) True G116723
TU157612 lncRNA downstream 199078 22234819 ~ 22236599 (+) True LOC120568856
XR_005640796.1 lncRNA downstream 200171 22235912 ~ 22238505 (+) False LOC120568856
XR_005640771.1 lncRNA downstream 272026 22307767 ~ 22314947 (+) True LOC120568744
TU157668 lncRNA downstream 429594 22465335 ~ 22472840 (+) True G116978
TU157787 lncRNA downstream 711379 22747120 ~ 22747732 (+) True G117077
XM_039815514.1 mRNA upstream 7806 22015922 ~ 22017307 (+) True znf830
XM_039815507.1 mRNA upstream 22249 21995605 ~ 22002864 (+) False LOC120568175
XM_039815821.1 mRNA downstream 30273 22066014 ~ 22149833 (+) False LOC120568357
XM_039815823.1 mRNA downstream 30273 22066014 ~ 22149833 (+) False LOC120568357
XM_039815822.1 mRNA downstream 30273 22066014 ~ 22149736 (+) False LOC120568357
XM_039815813.1 mRNA downstream 30275 22066016 ~ 22151613 (+) True LOC120568357
XM_039815815.1 mRNA downstream 30275 22066016 ~ 22151613 (+) False LOC120568357
XR_005640709.1 other upstream 127722 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 1109825 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1649480 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2508168 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 3006387 19017058 ~ 19018726 (+) False LOC120568770
TU157733 other downstream 572323 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 605769 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1641338 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1815138 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1832513 23868254 ~ 23868325 (+) True trnaw-cca_13

Expression Profile