RNA id: XR_005640673.1


Basic Information

Item Value
RNA id XR_005640673.1
length 1702
lncRNA type intronic
GC content 0.44
exon number 3
gene id LOC120568205
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1183593 ~ 1185428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgacatgtaataatgtactgtcacagagctgcgaaaaatcaacatactgtcacagagctgcgaAACATCAAcatactgtcacagagctgcgaAACATCAACCTACTGTCACAGTGGcgagaaaaaagtgacaaaaaggcgacaaacaacgaaaaaggaaacaaaaaagtgactaaagGCGACAAAAAAGTGTTAAAGGTGTGACCGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTAACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTAACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTAACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTAACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTAACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTAACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTAACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTCTTGTCTCCAGATAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTTTCTCCAGGTAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGATAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTGTTGTCTCCAGGTAAAGAGGTAAAGGTGTGACTAAAGGTGTGACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640682.1 lncRNA upstream 4961 1177298 ~ 1178632 (+) True LOC120568206
XR_005640680.1 lncRNA upstream 4961 1177298 ~ 1178632 (+) False LOC120568206
XR_005640681.1 lncRNA upstream 4961 1177459 ~ 1178632 (+) False LOC120568206
TU149500 lncRNA upstream 90868 1020863 ~ 1092725 (+) False cdyl
TU149509 lncRNA upstream 122846 1060314 ~ 1060747 (+) True G111012
TU149556 lncRNA downstream 15397 1200825 ~ 1201498 (+) False G111052
TU149566 lncRNA downstream 20361 1205789 ~ 1206506 (+) True G111060
TU149591 lncRNA downstream 45381 1230809 ~ 1231575 (+) True G111074
TU149609 lncRNA downstream 198512 1383940 ~ 1384169 (+) True G111092
TU149610 lncRNA downstream 199776 1385204 ~ 1385497 (+) True G111093
XM_039816047.1 mRNA upstream 90830 1070547 ~ 1092763 (+) True cdyl
XM_039816046.1 mRNA upstream 120194 1040826 ~ 1063399 (+) True LOC120568483
XM_039815034.1 mRNA upstream 144285 1035370 ~ 1039308 (+) True LOC120567933
XM_039815044.1 mRNA upstream 156769 1023627 ~ 1026824 (+) True LOC120567938
XM_039815042.1 mRNA upstream 185378 994091 ~ 998215 (+) False LOC120567936
XM_039815564.1 mRNA downstream 22740 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039817012.1 mRNA downstream 40622 1226050 ~ 1287799 (+) True pex5lb
XM_039816703.1 mRNA downstream 136786 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039816053.1 mRNA downstream 490314 1675742 ~ 1683286 (+) True LOC120568494
XM_039816058.1 mRNA downstream 703695 1889123 ~ 1890298 (+) True LOC120568500
TU149501 other upstream 90868 1080473 ~ 1092725 (+) False cdyl
TU149498 other upstream 90868 1088597 ~ 1092725 (+) False cdyl
TU149499 other upstream 90868 1088597 ~ 1092725 (+) False cdyl
TU149506 other upstream 198340 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149102 other upstream 429164 745169 ~ 754429 (+) False dnajc1
TU149593 other downstream 57221 1242649 ~ 1336191 (+) True G111076
TU149588 other downstream 136814 1322242 ~ 1342297 (+) True si:ch1073-184j22.1
TU149630 other downstream 255225 1440653 ~ 1441147 (+) True G111106
unassigned_transcript_479 other downstream 258735 1444163 ~ 1444665 (+) True LOC120567879
unassigned_transcript_480 other downstream 264961 1450389 ~ 1459918 (+) True LOC120567883

Expression Profile