RNA id: XR_005640682.1



Basic Information


Item Value
RNA id XR_005640682.1
length 1015
lncRNA type intronic
GC content 0.37
exon number 3
gene id LOC120568206
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1177298 ~ 1178632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTAGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCATTAgttatatacattataccaCACCAAGTACTCTCTCGCAgtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctctcgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTTGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatatattataccacACCAGGTACTCTCTAGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatatta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149500 lncRNA upstream 84573 1020863 ~ 1092725 (+) False cdyl
TU149509 lncRNA upstream 116551 1060314 ~ 1060747 (+) True G111012
TU149541 lncRNA upstream 126936 1049919 ~ 1050362 (+) True G111041
TU149540 lncRNA upstream 133136 1043518 ~ 1044162 (+) True G111040
TU149534 lncRNA upstream 144922 1031000 ~ 1032376 (+) True G111034
XR_005640673.1 lncRNA downstream 4961 1183593 ~ 1185428 (+) True LOC120568205
XR_005640676.1 lncRNA downstream 4961 1183593 ~ 1185428 (+) False LOC120568205
XR_005640677.1 lncRNA downstream 4961 1183593 ~ 1185428 (+) False LOC120568205
XR_005640678.1 lncRNA downstream 4961 1183593 ~ 1185428 (+) False LOC120568205
XR_005640674.1 lncRNA downstream 4961 1183593 ~ 1185428 (+) False LOC120568205
XM_039816047.1 mRNA upstream 84535 1070547 ~ 1092763 (+) True cdyl
XM_039816046.1 mRNA upstream 113899 1040826 ~ 1063399 (+) True LOC120568483
XM_039815034.1 mRNA upstream 137990 1035370 ~ 1039308 (+) True LOC120567933
XM_039815044.1 mRNA upstream 150474 1023627 ~ 1026824 (+) True LOC120567938
XM_039815042.1 mRNA upstream 179083 994091 ~ 998215 (+) False LOC120567936
XM_039815564.1 mRNA downstream 29536 1208168 ~ 1214476 (+) True si:ch1073-184j22.2
XM_039817012.1 mRNA downstream 47418 1226050 ~ 1287799 (+) True pex5lb
XM_039816703.1 mRNA downstream 143582 1322214 ~ 1342351 (+) False si:ch1073-184j22.1
XM_039816053.1 mRNA downstream 497110 1675742 ~ 1683286 (+) True LOC120568494
XM_039816058.1 mRNA downstream 710491 1889123 ~ 1890298 (+) True LOC120568500
TU149501 other upstream 84573 1080473 ~ 1092725 (+) False cdyl
TU149498 other upstream 84573 1088597 ~ 1092725 (+) False cdyl
TU149499 other upstream 84573 1088597 ~ 1092725 (+) False cdyl
TU149506 other upstream 192045 982519 ~ 985253 (+) False si:dkey-154p10.3
TU149102 other upstream 422869 745169 ~ 754429 (+) False dnajc1
TU149593 other downstream 64017 1242649 ~ 1336191 (+) True G111076
TU149588 other downstream 143610 1322242 ~ 1342297 (+) True si:ch1073-184j22.1
TU149630 other downstream 262021 1440653 ~ 1441147 (+) True G111106
unassigned_transcript_479 other downstream 265531 1444163 ~ 1444665 (+) True LOC120567879
unassigned_transcript_480 other downstream 271757 1450389 ~ 1459918 (+) True LOC120567883

Expression Profile