RNA id: XR_005640691.1


Basic Information

Item Value
RNA id XR_005640691.1
length 3164
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120568243
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 35839861 ~ 35843853 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGATTATTCCTAAACGATCTTGATGTGTCACTGAAATGATAATCAATGTGATGTTATCCCTAACTCAGTGTCAAACAAAGGGTCAGGCACCGGGAGAGTCAGTGTGCGAGCTATGTGCCACAGGTCCCTGAAGAAAAAGATTGTCCTCAAAGACTCCTCCCCAGTGCAGCTGTATGAGACGGTGTGCTCGTGTGCTGCTGACAAGGCACTTTCCAACCATACCGTTGCTCTCCTTTTTCAGACGGCGACCTACTCTCACCTCCACCTCCTTGCTGTACCCCCAGTCCTTAGCTGCACCGAGACAGCGCAACGCTGGCACAAGCCAAGGACTATGGAGCACTCTCTACACGGCGATGCAGGGGGGGGATGTGCATGATCCTGATGTTTTAAAAGTGACAGAAGCATATGAAGGCTTTTCACCTGACATAGCACCCCTTATTACCACCATGTCCATCAGTGCTGATGTCCCGCTGGTCGAGTCAGCTTTGGGCAAAGTTCAGGAGGGAAGCCCGATCTCTTACCAGCAGCCAGTGCCACTCAGCCGCATCATGTTACTCCACACTGGAGCTCCTCCACCCCCACCTCTGCCCTCGGATGGCTACAGATTGGAGCCCACTTGTTGCCAGTTTGTGTGCAGTCTCCACCAGCAACTGCATCTGCAATCTCTACAGACCAACTTGGAAATGACAAGGGGAATAGAAGTGGCAACGAGGGACCAGACTATGTCTGTGGAGTGGCATCGGGTCAGAAAGATGAGATTAACATCTTCTCACTTTAGGGAGGTTTGTCATGTTCGTGGTCAGACATCAGCAGTACATCTCGCTGAAAGACTGTTCAGGGGGTGTGGCCCAAACATTGGTCATGAAAAGAGGTCTGGCATTGGAGCCACAGGCCATTCAAGAGTACTGTAAAGTGAAGAACAACAGCTACTGGCCTTGTGGCTTCGTCATACACCCTGATGGCCCCCTGGTTAGGATCTTCTCCCAAtggggttgtttttttcaagaGTTATGTTTACTGCAAATACCTGAAGCTCCACAATGACTCTATGAAgctaaaaaagcaacacagctacTACTGGCAGATCCAAGGGCAACTCCTTCTGACAGGTATGGACTGGTGTgactttgttgtttttgcagAGGAGGACATGGTCATTCACAGAATATACAAGGACCCAGAGGAGGCTGCAGTCATCGGGCAGAAGggggattttttctttttctactttCACTTATGTTCCGTGAATCACTTTAAACTTGAATCACCCTATTCTCCCTaggtatgtgtttgtgtacaatTTAAGCTcatagttgtcattacaaagtaCACATGTACGTGTCTGTAAATAGTTTCATGTTTATTATGTATAAGTTATCAATACAAACCTATATAAGGTGCCTTTTTTTATGTAATGTAtatagttgtcattacaaaccTATACGAGGTGCTTTTTGTTTATGTAATGTATACATTTGTCATTACAACCCTATACAAGGTGCCTTGTTATTGTTAAGTGTTCAGCTCAAAGACAGATGCTGCTATTTCTGTGTGCAGTTAAATGTCAACAGTTCTCTACAAACCCATGATGTTCATCCAGTACTGACTTAAGTCATACAGTTGTGTATGTACAAACATAACTAAAATATACATGCCTGTAGCATGCTTGTGCATATAGTTATCACTACAAACCTATACATGGTGCGTTATGTTACTTTTGGGTGTTTAGCTCATTTATCTTGACACAACAGTCATCTGTAACTATAGGCCCATCTCCAACCTACCATTTCTCAGCAAGATAATAGAAAAAACGGTTGCTTTTCAGCTCAATTATTATCTAACGTTAAACAACCTCCTGGATAATTATCAATCAGGCTTTCGGCCTTatcacagcacagaaaccacACTTATTAAAGTTGTGAATGATCTGCATATAAATACTGACTCTAATAAATTATCTGTTCTTGTGCTTCTGGACCTCAGTGCCGCCTTTGACACCGTTGACCATCAGATTTTATTACACAGATTAGAAACATGGGTCGGCCTGTCTGGTCCAGTCTTAAACTGGTTTAGAACTTACCTGTTGGATAGGCAATTCTTTGTGTCCATTGGGGATTTTGTCTCGGACAAAAGGGCCACTAtgtgtggagttccccaaggttCAATTCTTGGACCATTATTGTTTAATCTCTACATGCTCCCACTAGCACATGttataaagaaacacaacataaattACCATAATTATGCAGATGATTCACAGCTATACATATCCTTAACTCCTAATGACATGAATCCCATACACTCTCTAATCAATTGTATCGGTGATGTTAATATGTGGATGTCAGAGAATTTCCTACAACTAAACAAGGATAAAACAGAAATACTTATCTTTGGTGCTAAGGCTCAAAGACAGAAAATTGTGGCTTATCTCAGTTCTCTGTCTCTAGAGAGCAAAAGCGAAGCTATAAATCTGGGTGTTATATTAGACAGTGATTTAAATTTTAAGCGTCATATCAACCAAGTCACAAAATCAGCCTTCTACCATCTTAAACATATTTCTAAATTAAGGGTCTTTCTGTCAAAGGAAGACgctgaaaaatttaaaaattgatCCATGCATTTATAACAAGTAGATTAGATTACTCTAACGGTCTTTTCACCGGCATTCCAAAATCAACTGTGCAGCGATTACAATTAATTCAAAATGTGGCTGCACGTGTTCTGACTGGAACAAAGAAGTTTGAACATATTACACCTGTCCTTAGACTTTTACACTGGCTCCCAGTAAAGGctagaattgattttaagattctgCTCCTAGTATATAAAGCTCTCAATGGCCTTGCACCTCAGTATATTAGAGACATGCTCATTATATATGAACCAGCAAGACTCCTCAGATCCACAGGCAGTGGTCTTTTAACTGTCCCTCGCTGTAACTCCAAAACAGGGGAGGCTGCTTTTTGTGTCTATGCCCCAAAGATATGGAATACCCTGCCAGTGGAACTGAGAGAGGTCTCCACactgaacatttttaaaaaagggataaaaacctttctttttacaaAGGTTTATGATTAACAGAGTTTGTCGCTGTTCAATGTTGAtctttttaagtgtgtgtgtttgtgtgtgtgtgcctaatATCCTCTGTATACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640689.1 lncRNA downstream 61437 35771059 ~ 35778424 (-) True LOC120568239
XR_005640688.1 lncRNA downstream 98507 35739683 ~ 35741354 (-) False LOC120568238
XR_005640687.1 lncRNA downstream 98507 35739683 ~ 35741354 (-) True LOC120568238
TU162309 lncRNA downstream 148645 35685487 ~ 35691216 (-) True G120559
XR_005640812.1 lncRNA downstream 186530 35650694 ~ 35653331 (-) True LOC120568941
TU162376 lncRNA upstream 54400 35898253 ~ 35898958 (-) True G120617
TU162382 lncRNA upstream 59108 35902961 ~ 35903223 (-) True G120623
TU162391 lncRNA upstream 75026 35918879 ~ 35919159 (-) True G120631
TU162424 lncRNA upstream 203611 36047464 ~ 36047706 (-) True G120664
TU162425 lncRNA upstream 246972 36090825 ~ 36091343 (-) True G120665
XM_039815623.1 mRNA downstream 3831 35826950 ~ 35836030 (-) True tyw3
XM_039815622.1 mRNA downstream 30794 35791949 ~ 35809067 (-) False LOC120568240
XM_039815621.1 mRNA downstream 30794 35791949 ~ 35809067 (-) True LOC120568240
XM_039815620.1 mRNA downstream 116942 35719998 ~ 35722919 (-) False LOC120568237
XM_039815618.1 mRNA downstream 116942 35719998 ~ 35722919 (-) True LOC120568237
XM_039816629.1 mRNA upstream 67734 35911587 ~ 35914279 (-) True LOC120568882
XM_039816952.1 mRNA upstream 84777 35928630 ~ 35933752 (-) False LOC120569092
XM_039816951.1 mRNA upstream 84777 35928630 ~ 35933214 (-) True LOC120569092
XM_039814679.1 mRNA upstream 118738 35962591 ~ 35964054 (-) True LOC120567710
XM_039816408.1 mRNA upstream 299434 36143287 ~ 36345526 (-) True LOC120568723
TU162164 other downstream 825647 35012408 ~ 35014214 (-) False LOC120567704
TU162119 other downstream 943948 34895579 ~ 34895913 (-) True G120390
unassigned_transcript_566 other downstream 1071347 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 1435848 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 1610811 34228626 ~ 34229050 (-) True G120168
TU162546 other upstream 867357 36711210 ~ 36737250 (-) False LOC120567714
unassigned_transcript_582 other upstream 1155964 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 1160107 37003960 ~ 37004042 (-) True trnal-caa_5
unassigned_transcript_584 other upstream 1160748 37004601 ~ 37004683 (-) True trnal-uaa_11
unassigned_transcript_585 other upstream 1194658 37038511 ~ 37038593 (-) True trnal-caa_6

Expression Profile