RNA id: XR_005640717.1


Basic Information

Item Value
RNA id XR_005640717.1
length 1344
lncRNA type intronic
GC content 0.43
exon number 5
gene id LOC120568402
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9429413 ~ 9431614 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTATATTGCTATGTTTTCTCCAGGTTATTTTGAATGGACAGCTTTGTCGCTGATAAGCTAACTGAGTGGCGGCTATCTGAGCTGATAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGACATTGGCTATaTTTCCAGAGACTCCAGAATCAAAACCAAGCTCTGAGGGAGGAGAACCACGCCCTGAGGGAAAGCAATGCACAAGCAGCTTTGGATGACAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGGACTTGGCAATCAGGTGCAGATCAGACCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTACGCATTACCTGAAAGGAGCATCTGACCGTGAAGGCGGAAAAAAGGCGCCGCACAGCTGAGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCAGACTACACTCACCCAATCCACACTATTCACTgtggaaattattattttttcttctccttcttctttttttccctaggGTCATTCCCCATGACCCTGCCTTGAGGGCAGCGCCTTGGATGGATATGGGATGGTGAGGTTTTTTGTCCTTTATACAGGCGCACGAGGGATCACTGAAGACATGCCCATTTTGCGCTGCCTCATTCTGGAGATCCCGTAGTCAGGCTTGAAAGACTGATTATCATTACTTAGACTGTCCTGCAATTCTTAGCCCACCCCACGCAGACCCCAACCACTCCAcacattctgattggctgtgttcTCTACAGCCAGATTTCCTGCTGTTATTGTTTGTTCCCACTTGTTGTCATGTGTAAATTTAATGTCAAAATGTATATTACCTGGTATATCCTGCACAGTCTTTTGATACCAAAGATCTCAATTACTTCCTATACAATTTGCTGTTGCAGTGCTTATTCTATTTATAAATATAGCTTGTAAATCCTAGATTATACCTCTAATACTTGATATCTGCACATTATCTGTTCTGGTACCAAATATTCTACTTAACGTGACTTTAGTATTGGCTTATTTCATTCCGTCAGTGCTTAACAATGGTATTATAGTTTGTAAATCCTATTTCATACCTGTTACTTGATATTGCACATTAACTAGTACCAAAATTCTACTTTCATTCCA

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152826 lncRNA downstream 6017 9370975 ~ 9423396 (-) True G113350
TU152827 lncRNA downstream 6017 9370975 ~ 9423396 (-) False G113350
TU152834 lncRNA downstream 9636 9388310 ~ 9419777 (-) True G113356
XR_005640718.1 lncRNA downstream 13592 9414769 ~ 9415821 (-) True LOC120568403
TU152841 lncRNA downstream 40481 9369066 ~ 9388932 (-) False G113356
TU152852 lncRNA upstream 2028 9433642 ~ 9434515 (-) False G113364
TU152853 lncRNA upstream 2028 9433642 ~ 9435193 (-) True G113364
XR_005640715.1 lncRNA upstream 27889 9459503 ~ 9459924 (-) True LOC120568399
TU152878 lncRNA upstream 105023 9536637 ~ 9666053 (-) True LOC120567814
TU152882 lncRNA upstream 168543 9600157 ~ 9601057 (-) False LOC120567814
XM_039815914.1 mRNA downstream 70880 9352318 ~ 9358533 (-) True cryz
XM_039815911.1 mRNA downstream 77249 9343577 ~ 9352164 (-) False lrrc53
XM_039815910.1 mRNA downstream 77249 9343577 ~ 9352164 (-) True lrrc53
XM_039815633.1 mRNA downstream 198396 9200888 ~ 9231017 (-) True rab2a
XM_039816406.1 mRNA downstream 234541 9116824 ~ 9194872 (-) False chd7
XM_039815913.1 mRNA upstream 61604 9493218 ~ 9510497 (-) False LOC120568397
XM_039814857.1 mRNA upstream 102651 9534265 ~ 9537562 (-) True ankrd45
XM_039814856.1 mRNA upstream 120378 9551992 ~ 9563741 (-) False fitm1l
XM_039814855.1 mRNA upstream 120378 9551992 ~ 9558745 (-) True fitm1l
XM_039814914.1 mRNA upstream 243270 9674884 ~ 9788220 (-) False map4l
TU152846 other downstream 25801 9401742 ~ 9403612 (-) False LOC120568397
unassigned_transcript_549 other downstream 534290 8895050 ~ 8895123 (-) True trnan-guu_8
unassigned_transcript_547 other downstream 537409 8891931 ~ 8892004 (-) True trnan-guu_6
unassigned_transcript_540 other downstream 555931 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_538 other downstream 556908 8872434 ~ 8872505 (-) True trnag-ucc_9
TU152848 other upstream 75434 9507048 ~ 9510481 (-) False LOC120568397
TU153067 other upstream 1455393 10887007 ~ 10888847 (-) False LOC120567758
unassigned_transcript_557 other upstream 1455475 10887089 ~ 10888952 (-) True LOC120567758
TU153382 other upstream 2786448 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 3169566 12601180 ~ 12602909 (-) False nedd8l

Expression Profile