RNA id: XR_005640733.1


Basic Information

Item Value
RNA id XR_005640733.1
length 2677
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120568563
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32330829 ~ 32352681 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCATGTACTTCCTTATTTTTATCGTTCCTCTCTAAACTCTGCTATAAGGCTCGATATCTGTTAAATTCAATCCATCATCAAGGAAGCAGATTTGAACATTGAAGTCGGTGAAGAGCACTGCAGTCTCCTTTGGGGAGACTATGATGGAGGACTTCAGGCAGGATGGACAGTGAGCTGAGAGAGTGACTGTTTGAAGATCATAGTAAAGAATCCCACTAGCTGGTCTGCAAAGTCCTTCAGTGCATATCCGCAGACGGCATCAGGGCCGGCCACCTTCCGCGAGTTGACTGTCTCTGGGTACGCCTCACCTCATGCTCCTCTACCATGTGGATGGTGTCGCTGTGGGCTGCTGAATGTGGTGTGGCTGCCTCTGGTGGTTTAACCTCAAAGCAGCCCTCAATACCGCTCCTCCACCACAGGATGGCGACGGCAtcaaacagaagaaaaacacaaccCACTTGACGACTTCTCTGCCTCGGAGACACAAAGCCTGTGACATCATCTGCGGAGGGACAGAGGGTGTGCGAAGGACAAATGTCCTGAAATGCATTACATCATTCTGCACTAATATGATAATATATCTCAGGCTGTGAGTGCGGTGCCAAGCATGAGAGGGGCCATAATCCATACGACTGCTTCAAATGTGAACAAGGGGATAAAATGAAAGTGGACGTGGTAGTGGAgaagtaggggggggggggtctgctGGAGTCGGGAGTGCAGTGCTGAAGGTTATTCCAGACATTATTCTTCAATGagagcaggaggagagaggagaggatcaTCACTATTACACACTAAGTAAAGATGAGGAAGGGAGGCTAAAACGCTTCCTTGTCTGTCTTCTGTCCTTGTCCTTCTTTTTCCTGTCATatctgttctttctttcttgctttCGCTTTTTCTCAACCCTCATTTTTCCTGTCattcagaggagaggaggaccgaggagagaaaggagacaAAGATGTGTAAGAAAAAGGTTGCAGAGTCGAAAGAAGGACTGACAAGTCGCAAAAGGGAGGATTTGAAAAGGATGTAAGAGGtgagagagtgagggaggagaagaATTGAGAGAGGAGAGGTGAGGAAATGAGAGGAAACAGAagaatgaaaagagagagattggGAGAAAAAGGTAGACAATGGGAGaaaaggggagaggaggagaaagttGGAGAGAATTGAAGAGCTACCGCAAAATCTAAAAAGAGGAGAGGTGAGAGGATGAAtaaggagaaaaaaagcagaaaggaAGAGCGAGGGAAGATgcaaaggagaggaggaaaaagtTGCTGTGATGTGAGAAGAAGTGACAACATGAGGTtagggaagagaggagaggagaagggaaAAGATGAGGCAGGAGAGGTCGGACTTTGTAGAGACAAAACAGTTAGAAGATGTGAAAGGAGGACTGAGAAGAGGAAATAGGAGAGGAGATCAGAGGAAGGacagagagatgagaggaggaGGTAAGGAGGTGAAcagagaaaatgtgaaatgagGAGTAAGGAGTGGAGAGACGAGGGTAGGGGACATGAAAGAAGGACTGAGGACACAGCTTAAAGAGAAATCATTGAAAtgggaagaaaacaaagaagaaaagggGAGGTGAGGatagaagaagagagagaggtgaaagTAGGGTTTTTGGGGTTTTCAAAGTCCCTTTATTTGATCATTTTCAGAGAAGaattacaataacaaaaaaacaaaaaggactcAGAACATGTAGAAGAAAAACGCGGGAGAGGTGGAGAAGGTAATGTAAAAAGGAATGAGAAGATGAGGCAAAAGAAGAGGACTACAACACTACATGGACggagggaaaagagaggaaaaaagaggagagagaggatgatTGACAATATGATGCAAGGAAAGATGAAAGATCAGACAGTACGAGAAGTGAAAGGACAGTAGGAGAGGAGAAATGAGAAAAAAGGATGACAGAAGAGGGTAAGAGAGGTGAAAAGAAGGGAAAGGAGAAGGTTGGAGATGTTAGGGAAAAACTGGGAAGATGATGCATGGCTGAAGaaaccaaatgaaaaaagagaggaggagacgaGATGTGATGTGATAGGAGGACTGAAGAGAAGAAgtagaaggagaggagaggaggacacagggcaaagcaaaacaaagagacaAGGCGAAGgagtgaaagagaagaagaaaggagagacaaaatggagaaagaagaaaggaaaaggtTACAAAGATGAGATGAGGACTAACAGGATGATTTAAGGAGAGAGAGCAAAGACAAGactgaaggagaggagaggagaggagaggagttgcTCTGCATGTTTTTCATGTGCACAATGTCTTCTTTTGCCATTTCCAGCCACAGCTGTTAGTAAAGTTTAATGCTTTTCTGATGCTTTCGACTGGTTCtcttactgcaggggggccaccaaattattgataatttttttgaaagttgttttcaaaaaatgaaaatgtcttaacatgaatccaacagaTATAAATCAGTCTATTTGTGGAGAAAAAAAcccattgatgataggcttacagacctgtaggtaaggtagtcTCTAAAGCCAGCCACATACAGTTcataaggattcactgtgccacatgttttttaacattaaaacatgatttataaaatcatgccaacaattattttatcagcttagtattct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160952 lncRNA downstream 757 32326772 ~ 32330072 (-) True G119472
TU160933 lncRNA downstream 206339 32123339 ~ 32124490 (-) True G119455
TU160853 lncRNA downstream 220312 32105344 ~ 32110517 (-) True G119394
TU160823 lncRNA downstream 364603 31949459 ~ 31966226 (-) True G119368
TU160805 lncRNA downstream 411702 31918039 ~ 31919127 (-) True G119358
TU160957 lncRNA upstream 11780 32364461 ~ 32364781 (-) False LOC120568568
TU160958 lncRNA upstream 12178 32364859 ~ 32365094 (-) False LOC120568568
TU160959 lncRNA upstream 50845 32403526 ~ 32419889 (-) True G119479
TU160962 lncRNA upstream 65282 32417963 ~ 32418995 (-) True G119482
TU160974 lncRNA upstream 86146 32438827 ~ 32454048 (-) True G119492
XM_039816637.1 mRNA downstream 464132 31865738 ~ 31866697 (-) True LOC120568891
XM_039816634.1 mRNA downstream 470751 31838382 ~ 31860078 (-) True kcnj9
XM_039816983.1 mRNA downstream 509405 31802504 ~ 31821424 (-) False LOC120569109
XM_039816984.1 mRNA downstream 515725 31802504 ~ 31815104 (-) True LOC120569109
XM_039815237.1 mRNA downstream 544645 31714287 ~ 31786184 (-) False LOC120568044
XM_039816160.1 mRNA upstream 12038 32364719 ~ 32374518 (-) True LOC120568568
XM_039816157.1 mRNA upstream 136136 32488817 ~ 32513979 (-) False LOC120568565
XM_039816155.1 mRNA upstream 136136 32488817 ~ 32513978 (-) False LOC120568565
XM_039816153.1 mRNA upstream 136136 32488817 ~ 32513978 (-) True LOC120568565
XM_039816154.1 mRNA upstream 136136 32488817 ~ 32500101 (-) False LOC120568565
TU160944 other downstream 104469 32216502 ~ 32226360 (-) False G119465
TU160945 other downstream 104469 32218507 ~ 32226360 (-) True G119465
TU160835 other downstream 279390 32047477 ~ 32051439 (-) True G119379
TU160692 other downstream 755639 31490252 ~ 31575190 (-) False zeb1a
TU160576 other downstream 1159219 31170382 ~ 31171610 (-) False G119169
TU161095 other upstream 409664 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 409664 32762345 ~ 32765076 (-) False fcer1gl
TU161088 other upstream 409766 32762447 ~ 32765151 (-) False fcer1gl
TU161089 other upstream 409766 32762447 ~ 32765151 (-) False fcer1gl
TU161092 other upstream 409766 32762447 ~ 32765151 (-) False fcer1gl

Expression Profile