RNA id: XR_005640739.1


Basic Information

Item Value
RNA id XR_005640739.1
length 428
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC120568643
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6388094 ~ 6392982 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACGTTGTGGAAAATGAGGGATTTTGTCACTTGCTAAAAACACTGGAACCAAGGTCGTAATCTCCcaggaaaggaggagaggaaaataaCATCTCTATAGCAACGGCCGGTCTAAAGAAGGTGAGCCGTTGCGGTGCGGGAGAAGACGCAGAGCGACCACGGGCGCCCGGACACAAACGTGCACGTTCATGCTGGACACATGGTTTCCAAACTGATGTAGATTAGGTACAGCTGAGATACTTTGAGAGGGGGAAGAGCTCACGGTGGAGCAGGAGAACAGCACCGAGGTCTGACGGGAACAGGAACGTTGGGACTCATTTAACCAGCGTTAGAGAAATGCAAAATGAGAGAAACATCTATGTGAAATTACTTTCAGAATGTctggtttgttttatttttacagcacGTATTAAAGAAACTGACTGTTA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151640 lncRNA downstream 28142 6359472 ~ 6359952 (-) True G112462
TU151639 lncRNA downstream 28765 6358079 ~ 6359329 (-) True G112461
TU151638 lncRNA downstream 30104 6356798 ~ 6357990 (-) True G112460
TU151626 lncRNA downstream 40241 6347335 ~ 6347853 (-) True G112453
TU151627 lncRNA downstream 40241 6347335 ~ 6347853 (-) False G112453
TU151715 lncRNA upstream 161 6393143 ~ 6400383 (-) True G112531
TU151718 lncRNA upstream 3708 6396690 ~ 6399552 (-) True G112533
TU151723 lncRNA upstream 46077 6439059 ~ 6439839 (-) True G112537
TU151727 lncRNA upstream 87096 6480078 ~ 6480789 (-) True G112540
TU151776 lncRNA upstream 219080 6612062 ~ 6612306 (-) True G112577
XM_039816824.1 mRNA downstream 88123 6284160 ~ 6299971 (-) True gtpbp4
XM_039816825.1 mRNA downstream 104596 6256300 ~ 6283498 (-) True LOC120569024
XM_039816292.1 mRNA upstream 304566 6697548 ~ 6736512 (-) False zmynd11
XM_039816290.1 mRNA upstream 304566 6697548 ~ 6736512 (-) False zmynd11
XM_039816291.1 mRNA upstream 304566 6697548 ~ 6736512 (-) False zmynd11
XM_039816288.1 mRNA upstream 304566 6697548 ~ 6736512 (-) True zmynd11
XM_039816289.1 mRNA upstream 304566 6697548 ~ 6736167 (-) False zmynd11
unassigned_transcript_534 other downstream 160310 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 161348 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 166997 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 167560 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 168140 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 2094485 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 2387470 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 2479452 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 2480428 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 2498949 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile