RNA id: XR_005640743.1


Basic Information

Item Value
RNA id XR_005640743.1
length 547
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC120568661
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17356351 ~ 17357209 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaaataatgtcatgggcggggccacgttcctattggccagtcgggtgagcaccgtcttgtcttgggagtcgaactgaatcattacactGGCTGAGCAATGCCAGCCAGGGGTATCCAGATACATTGCGCAACAAGGAACAATGGCTGCCAGGTCGACCAGAGAGAcccataaatggacgcCGGAGGAAACCCAGCAGCTGATCCACTTTCTGGCTGAGAACGAGCAGTAATCATGTGTAATTCATTCCTGTTCATGTacctgtacattgttgttggttatgatacaggacactaatgaaagaaatggggttggagggaaaggttactggccaacaggcatcacactatggtctggaatttcagaatagctgtagttttgtttgtttgtggtcttgtgtgtcttttagttttatacatttgagtgccttttttaGTGTGACATCTAAGTTATTGTTCTAATAGTTGATAATGGTTCTCTACATTTTTCTataatgtttttgcatgttatgtttatttttttgggaaataaagactttttttaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155728 lncRNA downstream 53793 17302264 ~ 17302558 (-) True G115458
TU155705 lncRNA downstream 191656 17164369 ~ 17164695 (-) True G115435
TU155704 lncRNA downstream 215134 17137754 ~ 17141217 (-) False G115434
TU155703 lncRNA downstream 216833 17137754 ~ 17139518 (-) True G115434
TU155702 lncRNA downstream 220538 17133873 ~ 17135813 (-) True G115433
TU155842 lncRNA upstream 191011 17548220 ~ 17552950 (-) True G115563
TU155848 lncRNA upstream 215688 17572897 ~ 17573129 (-) True G115568
TU155850 lncRNA upstream 216254 17573463 ~ 17574125 (-) True G115570
TU155864 lncRNA upstream 250247 17607456 ~ 17608257 (-) True G115577
TU155934 lncRNA upstream 608604 17965813 ~ 17967692 (-) True G115624
XM_039814936.1 mRNA downstream 57427 17297055 ~ 17298924 (-) True LOC120567855
XM_039816565.1 mRNA downstream 80562 17183162 ~ 17275789 (-) True LOC120568842
XM_039816998.1 mRNA downstream 179940 17165891 ~ 17176411 (-) True LOC120569119
XM_039814525.1 mRNA downstream 314888 17039804 ~ 17041463 (-) False ly97.3
XM_039814640.1 mRNA downstream 333958 17020735 ~ 17022393 (-) True LOC120567671
XM_039816885.1 mRNA upstream 135078 17492287 ~ 17542090 (-) True LOC120569062
XM_039816886.1 mRNA upstream 135078 17492287 ~ 17542089 (-) False LOC120569062
XM_039816888.1 mRNA upstream 135078 17492287 ~ 17542088 (-) False LOC120569062
XM_039816887.1 mRNA upstream 135078 17492287 ~ 17542088 (-) False LOC120569062
XM_039816892.1 mRNA upstream 198771 17555980 ~ 17564537 (-) False ndc1
TU155671 other downstream 247447 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 311289 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 314875 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 554087 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 716539 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 1125947 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1359673 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 1487696 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 1574765 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1864582 19221791 ~ 19222726 (-) True G116084

Expression Profile