RNA id: XR_005640744.1


Basic Information

Item Value
RNA id XR_005640744.1
length 771
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120568663
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18689634 ~ 18692121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTACTTATcctaagctagctagcagcaAGGTTACCGTTAGCTaagactaacgttagctgataAATGCGGTACTCTTCTAGCTAAGCAGATTGAGTTGAATGCAATGCAAATCCTGCAAATTCACCAACCTCAATGAAGCTGTTCTCCTGAAGCACTAGGCCTACTGTCTGTATCACAGAGGCAGGCAGAGTTCTATCGGATCACCAACAAGAACCTACTAGACGACTTTAGAGCAGCCATTAATCAGCACACTCTAGGACTGCTTGGACTCTATCGGGCTAGGAGGCCAGCTTTTCCGTCTGAGATGGATCAACTCCTTAAGGGACTGGATGAAGAGaCCAATGACATCACAGCACACACAGGCTGCAGCCTTGAAGGGCCTTCCTTGTATATCTGTGAAAGTCATGAGAAGCTGTTCAGGAGTTGTCTGGTGAGGGGTTATTAGCAACTCCTGTTTATGTTGTACTTGACTAGGATTGTTACCAAACAGTTAACACTGCCCATTTTTCCATTCCAGTTTATCTATCCACTGTTCTCCTTGCCCATTTTTATCTAAATGCATGAAGTGTCTCAAATAGATGTACTTTGCTGTTAATATTCTTTATTTAAGCTGCAATATTGAGAAATTTGGTTTGGTGCTCTTTAGTGCCATCTAAAAGCCCCAAAATTGCAACTGCACTGAAACGTATGGTTGTGAAACGGATAAGAAACTCAGTCAGAAATCTGTCATCAAATCCATGTTTACTCATTAATTAATCTAGATACCTAA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156236 lncRNA upstream 5169 18683714 ~ 18684465 (+) True G115862
TU156234 lncRNA upstream 5381 18683714 ~ 18684253 (+) False G115862
TU156224 lncRNA upstream 39830 18648774 ~ 18649804 (+) True G115856
TU156191 lncRNA upstream 43251 18632716 ~ 18646383 (+) True G115826
TU156184 lncRNA upstream 87374 18600758 ~ 18602260 (+) False skila
TU156238 lncRNA downstream 884 18693005 ~ 18694301 (+) True G115863
TU156239 lncRNA downstream 2270 18694391 ~ 18694646 (+) True G115864
TU156255 lncRNA downstream 28244 18720365 ~ 18725428 (+) False LOC120568911
TU156276 lncRNA downstream 141422 18833543 ~ 18833742 (+) True G115889
TU156310 lncRNA downstream 150451 18842572 ~ 18842794 (+) True G115921
XM_039816349.1 mRNA upstream 7215 18680600 ~ 18682419 (+) True LOC120568684
XM_039816350.1 mRNA upstream 7215 18680645 ~ 18682419 (+) False LOC120568684
XM_039816360.1 mRNA upstream 15494 18660429 ~ 18674140 (+) True LOC120568691
XM_039815325.1 mRNA upstream 64457 18614798 ~ 18625177 (+) False nadkb
XM_039816358.1 mRNA downstream 7361 18699482 ~ 18701227 (+) True LOC120568690
XM_039816359.1 mRNA downstream 7406 18699527 ~ 18701227 (+) False LOC120568690
XM_039816657.1 mRNA downstream 24237 18716358 ~ 18718511 (+) True apoda.1
XM_039816658.1 mRNA downstream 28246 18720367 ~ 18725447 (+) True LOC120568911
XM_039814844.1 mRNA downstream 38607 18730728 ~ 18737190 (+) True and2
TU156233 other upstream 15572 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 335290 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 659739 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1249171 17407491 ~ 17440463 (+) False LOC120568596
XR_005640724.1 other upstream 2163206 16439025 ~ 16526428 (+) False LOC120568419
TU156400 other downstream 324937 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 824732 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1681114 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2190585 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 3178832 21870953 ~ 21897391 (+) False LOC120568354

Expression Profile