RNA id: XR_005640756.1


Basic Information

Item Value
RNA id XR_005640756.1
length 559
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC120568724
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36204551 ~ 36206241 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTAGGAACTACTAATTTTAAAGTCGAGGCAGTAAAGGACCATGAGAGTTCCCGAAGTCATCAGGAGAGCCTAAGGATTAAAACTGCCAAGACAGGCCGTATGGAAGAGAGCCTTGCTGGGAGAAGCCTCGCTTTATTGAAGACGTCTGAGTTGGAGAAGATGCAGCTACTTTTTCGAAATGCCCACACCATCGGAAAAAAGGGCAGGCCTTTCACCGACTTTGCATGGATGTGTGAtccCAGGAGGCCACGAACATCAATTTTGTTCTGAGGGCAAAAGCCAAGGGGTTCCTCAAAATAGGCAAGGATGGTGGAGTGCTCAGGTTTTGCTGCCTTCTCCATGACACCATCTTCCAACTGAGCAACCTCTCCAAGTCACTGCAGAGGTCAGTGTCAACCCTGGCTGAAGCTCAGAGCTGCCTTTCCTCTACTCAGGCTGTCATAGAAAAGTACAAGTCAAGACCTGGGCCTAAGCTGAGAGCAGTGCTGTACACAGACTCCTATGAGGGAGTCCTCCTGAAGCTTACTGATGCCGACCAGCATGACAAGGCAAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162436 lncRNA upstream 15993 36188333 ~ 36188558 (+) True G120675
TU162372 lncRNA upstream 314296 35889886 ~ 35890255 (+) True G120613
TU162370 lncRNA upstream 315666 35888646 ~ 35888885 (+) True G120611
XR_005640690.1 lncRNA upstream 374294 35822425 ~ 35830257 (+) True LOC120568242
TU162336 lncRNA upstream 376681 35796182 ~ 35827870 (+) False G120582
TU162439 lncRNA downstream 15178 36221419 ~ 36221770 (+) True G120678
TU162477 lncRNA downstream 198312 36404553 ~ 36404765 (+) True G120714
TU162483 lncRNA downstream 205503 36411744 ~ 36558732 (+) True G120720
TU162586 lncRNA downstream 613322 36819563 ~ 36819774 (+) True G120796
TU162604 lncRNA downstream 657552 36863793 ~ 36865529 (+) False LOC120568212
XM_039816699.1 mRNA upstream 562518 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 760738 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 941649 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 1035835 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 242796 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 242796 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 359520 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 382413 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 417836 36624077 ~ 36710812 (+) True LOC120568504
XR_005640811.1 other upstream 595192 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_569 other upstream 1428402 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 1432330 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 1432405 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 1746940 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_570 other downstream 21583 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 22214 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 22812 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 28842 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_574 other downstream 31526 36237767 ~ 36237849 (+) True trnal-uaa_6

Expression Profile